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	<title>Juwitha Rawung</title>
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		<title>Juwitha Rawung</title>
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		<title>Berkat Sahabat</title>
		<link>http://juwitharawung.wordpress.com/2008/03/13/berkat-sahabat/</link>
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		<pubDate>Thu, 13 Mar 2008 07:21:02 +0000</pubDate>
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		<description><![CDATA[ Berkat Sahabat &#60;!&#8211;  //&#8211;&#62;  
&#60;!&#8211;  //&#8211;&#62; Oleh: Tidak Diketahui
&#60;!&#8211;  //&#8211;&#62;  &#60;!&#8211;  //&#8211;&#62; Ini kisah persahabatan dua anak manusia. Yang seorang adalah putra presiden, yang lain pemuda rakyat jelata bernama Pono.
Persahabatan ini sudah terjalin sejak mereka masih di bangku sekolah. Pono punya kebiasaan yang kadang menjengkelkan. Apa pun peristiwa [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=16&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p><font face="Verdana, Arial" size="1"><b><font face="Arial, Helvetica, sans-serif" size="2"> Berkat Sahabat &lt;!&#8211;  //&#8211;&gt; </font> </b><br />
&lt;!&#8211;  //&#8211;&gt; Oleh: Tidak Diketahui<br />
&lt;!&#8211;  //&#8211;&gt; </font> &lt;!&#8211;  //&#8211;&gt; <font face="Verdana, Arial" size="1">Ini kisah persahabatan dua anak manusia. Yang seorang adalah putra presiden, yang lain pemuda rakyat jelata bernama Pono.</font></p>
<p><font face="Verdana, Arial" size="1">Persahabatan ini sudah terjalin sejak mereka masih di bangku sekolah. Pono punya kebiasaan yang kadang menjengkelkan. Apa pun peristiwa yang terjadi di depannya selalu dianggap positif. &#8220;Itu Baik!” katanya senantiasa.</font></p>
<p><font face="Verdana, Arial" size="1">Hari itu seperti yang sering mereka lakukan, Pono menemani sahabatnya berburu. Tugasnya membawa senapan dan mengisi peluru agar selalu siap digunakan. Entah kenapa, barangkali belum terkunci secara sempurna, setelah diserahkan kepada sahabatnya senapan itu meletus. Akibatnya cukup fatal. Ibu jari putra presiden terkena terjangan peluru dan putus. Melihat itu tanpa sadar dengan kalemnya Pono berkomentar. &#8220;Itu Baik!” Kontan sahabatnya naik pitam. “Bagaimana Kau ini! Jempolku putus tertembak, malah dibilang Baik. Brengsek!” Agaknya, kali ini kelakuan Pono tak termaafkan. Ia dijebloskan ke penjara.</font><span id="more-16"></span></p>
<p><font face="Verdana, Arial" size="1">Beberapa bulan kemudian, sang putra presiden kembali pergi berburu ke Afrika. Malang, ia tersesat di hutan lebat dan ditangkap suku primitif yang masih kanibal. Malam harinya, dalam keadaan terikat ia akan dibakar untuk disantap ramai-ramai. Anehnya, mendadak ia dibebaskan. Belakangan ketahuan, suku tersebut pantang memangsa makhluk yang organ tubuhnya tidak lengkap.</font></p>
<p><font face="Verdana, Arial" size="1">Nasib baik itu membuat sang putra presiden termenung. Ia teringat kembali peristiwa ketika jempolnya putus tertembak lantaran ulah Pono. Ia kemudian menemui Pono di penjara.</font></p>
<p><font face="Verdana, Arial" size="1">&#8220;Ternyata Kau benar. Ada baiknya jempolku tertembak,” katanya sambil menceritakan peristiwa yang baru saja dialaminya di Afrika. &#8220;Aku menyesal telah memenjarakanmu.&#8221;</font></p>
<p><font face="Verdana, Arial" size="1">“Oh, tidak!’ Bagiku, ini Baik!”</font></p>
<p><font face="Verdana, Arial" size="1">“Bagaimana kau ini? Memenjarakan teman kau bilang baik?”</font></p>
<p><font face="Verdana, Arial" size="1">“Kalau aku tidak dipenjara, pasti saat itu aku bersamamu.”</font></p>
<p><font face="Verdana, Arial" size="1">Kisah satir ini mengingatkan pada pernyataan Randolph Bourne, intelektual Amerika yang juga anak didik John Dewey. Katanya, seorang teman itu memang dipilih untuk kita berdasarkan hukum perasaan yang tersembunyi, bukan oleh kehendak sadar kita si manusia.</font></p>
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		<title>Tips Eratkan Persahabatan</title>
		<link>http://juwitharawung.wordpress.com/2008/03/13/tips-eratkan-persahabatan/</link>
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		<pubDate>Thu, 13 Mar 2008 07:18:55 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
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		<description><![CDATA[13 tips eratkan persahabatan  1. KESABARAN
Belajarlah bersabar sekiranya sikap teman baikmu itu menyinggung perasaanmu, mungkin dengan kesabaranmu, temanmu itu akan mulai berubah &#38; mula berfikir tentang hati &#38; perasaan orang lain.
2. BERTERUS TERANG
Jgn sesekali kamu memendam perasaan jika kamu tdk menyenangi sikap teman2 di sekelilingmu. Cuba berbincang &#38; berterus terang agar masalah yg membelengu [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=15&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p><font face="Verdana, Arial" size="1">13 tips eratkan persahabatan</font>  <font face="Verdana, Arial" size="1">1. KESABARAN</font></p>
<p><font face="Verdana, Arial" size="1">Belajarlah bersabar sekiranya sikap teman baikmu itu menyinggung perasaanmu, mungkin dengan kesabaranmu, temanmu itu akan mulai berubah &amp; mula berfikir tentang hati &amp; perasaan orang lain.</font></p>
<p><font face="Verdana, Arial" size="1">2. BERTERUS TERANG</font></p>
<p><font face="Verdana, Arial" size="1">Jgn sesekali kamu memendam perasaan jika kamu tdk menyenangi sikap teman2 di sekelilingmu. Cuba berbincang &amp; berterus terang agar masalah yg membelengu dirimu aka selesai &amp; jgn meninggikan suara ketika berbincang.</font><span id="more-15"></span></p>
<p><font face="Verdana, Arial" size="1">3. IKHLAS</font></p>
<p><font face="Verdana, Arial" size="1">Sentiasa bersikap ikhlas &amp; jgn terlalu berkira dgn org lain. Sikap ikhlas kita akan menjadikan teman disekeliling akan lebih menghormati kita.</font></p>
<p><font face="Verdana, Arial" size="1">4. SALING MENGHORMATI</font></p>
<p><font face="Verdana, Arial" size="1">Saling hormat menghormati. Hormatilah org disekelilingmu &amp; sudah tentu org lain juga akan menghormatimu.</font></p>
<p><font face="Verdana, Arial" size="1">5. JUJUR</font></p>
<p><font face="Verdana, Arial" size="1">Belajarlah menjadi seorang yg jujur. Saling percaya mempercayai menjadi hubungan persahabatan yg dijalinkan akan berjaya. Sebaiknya, buang jauh2 sikap bermuka-muka kerana ianya sikap merenggangkan persahabatan.</font></p>
<p><font face="Verdana, Arial" size="1">6. SALING FAHAM MEMAHAMI</font></p>
<p><font face="Verdana, Arial" size="1">Saling faham memahami &amp; tdk berprasangka buruk adalah resepi utama dlm membina sebuah persahabatan yg berjaya.</font></p>
<p><font face="Verdana, Arial" size="1">7. SALING MEMAAFKAN</font></p>
<p><font face="Verdana, Arial" size="1">Jadilah seorang yg pemaaf sekiranya teman baikmua menyinggung perasaanmu. &amp; ketahuilah, sikap pemaaf itu merupakan satu perbuatan yg mulia. Malah dia dpt memberikan kesan positif terhadap diri kamu sendiri.</font></p>
<p><font face="Verdana, Arial" size="1">8. BERTOLAK ANSUR</font></p>
<p><font face="Verdana, Arial" size="1">Saling bertolak ansur juga merupakan satu faktor penting utk membina sebuah perhubungan yg murni. Sifat begini akan memberi manfaat pada diri kamu &amp; orang lain. Namun usah mengharapkan hanya org lain yg perlu bertolak ansur dengan kamu &amp; dlm masa yg sama kamu pula mengambil kesempatan ke atas mereka. Ini tdk adil namanya!</font></p>
<p><font face="Verdana, Arial" size="1">9. JAGA TUTUR KATA</font></p>
<p><font face="Verdana, Arial" size="1">Jagalah tutur kata &amp; jgn terlalu celupar ketika berbicara bersama teman-teman sekeliling kamu. Sikap lepas kata begini akan mengundang perselisihan faham antara satu sama lain.</font></p>
<p><font face="Verdana, Arial" size="1">10. NASIHAT MENASIHATI</font></p>
<p><font face="Verdana, Arial" size="1">Saling tegur menegur &amp; nasihat menasihati antara satu ama lain. Teguran hendaklah secara baik &amp; bukannya dgn melulu &amp; mengkritik. Bukankah saling ingat- mengingatkan itu satu perbuatan yg mulia?</font></p>
<p><font face="Verdana, Arial" size="1">11. AMBIL BERAT</font></p>
<p><font face="Verdana, Arial" size="1">Jgn pentingkan diri sendiri, sebaliknya ambil berat antara satu sama lain. Contohnya, jika temanmu sedang dilanda masalah. Berada di sisinya ketika dia sedang susah merupakan satu pengorbanan besar &amp; tanda setia kawan. Ia memberikan kekuatan &amp; sedikit bebanyak masalah yg ditanggunginya akan berkurangan. Tapi awas! Jgn nanti sampai kamu tak tahan telinga jika saban hari terpaksa mendengar luahan masalahnya. Kadangkala kamu juga punya masalah yg perlu diselasaikan!</font></p>
<p><font face="Verdana, Arial" size="1">12. SALING BERHUBUNG</font></p>
<p><font face="Verdana, Arial" size="1">Jauh dimata, dekat dihati. W/pun mungkin kamu dipisahkan oleh jarak &amp; kesibukan, apa kata kamu eratkan persahabatan dgn bertanya khabar. Telefon @ sekadar menghantar sms pun dah mencukupi tanda ingatan kamu kepadanya.</font></p>
<p><font face="Verdana, Arial" size="1">13. BERTELINGKAH</font></p>
<p><font face="Verdana, Arial" size="1">Sesekali bertelingkah yg berlaku akan menjadikan perhubungan bertambah baik. Kita lebih sling mengenali &amp; memahami antara satu sama lain. Tapi haruslah diingat, bergaduh tanpa bermaafan tak guna juga. Sekurang-kurangnya kita kenalah beralah, bermaaf-maafan agar kekeruhan yg melanda akan jernih semula.</font></p>
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		<title>Sahabat Allah</title>
		<link>http://juwitharawung.wordpress.com/2008/03/13/sahabat-allah/</link>
		<comments>http://juwitharawung.wordpress.com/2008/03/13/sahabat-allah/#comments</comments>
		<pubDate>Thu, 13 Mar 2008 07:13:53 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://juwitharawung.wordpress.com/2008/03/13/sahabat-allah/</guid>
		<description><![CDATA[
Sahabat Allah
 					11 					09 					2007 				

Yak 2:20-24 “Hai manusia yang bebal, maukah engkau mengakui sekarang, bahwa iman tanpa perbuatan adalah iman yang kosong? Bukankah Abraham, bapa kita, dibenarkan karena perbuatan-perbuatannya, ketika ia mempersembahkan Ishak, anaknya, di atas mezbah? Kamu lihat, bahwa iman bekerjasama dengan perbuatan-perbuatan dan oleh perbuatan-perbuatan itu iman menjadi sempurna. Dengan jalan demikian genaplah [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=14&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><div class="post">
<h2><a href="http://didia.wordpress.com/2007/09/11/sahabat-allah/" rel="bookmark" title="Read Sahabat Allah">Sahabat Allah</a></h2>
<p> 					<span class="date_day">11</span> 					<span class="date_month">09</span> 					<span class="date_year">2007</span> 				</p>
<div class="entry">
<div class="snap_preview">Yak 2:20-24 “<i>Hai manusia yang bebal, maukah engkau mengakui sekarang, bahwa iman tanpa perbuatan adalah iman yang kosong? Bukankah Abraham, bapa kita, dibenarkan karena perbuatan-perbuatannya, ketika ia mempersembahkan Ishak, anaknya, di atas mezbah? Kamu lihat, bahwa iman bekerjasama dengan perbuatan-perbuatan dan oleh perbuatan-perbuatan itu iman menjadi sempurna. Dengan jalan demikian genaplah nas yang mengatakan: “Lalu percayalah Abraham kepada Allah, maka Allah memperhitungkan hal itu kepadanya sebagai kebenaran.” Karena itu Abraham disebut: <b>“Sahabat Allah.”</b> Jadi kamu lihat, bahwa manusia dibenarkan karena perbuatan-perbuatannya dan bukan hanya karena iman</i>“<span id="more-14"></span></p>
<p>kata pak pdt, bagi yg pernah baca dr kitab kejadian mpe wahyu ga ada seorgpun yg disebut sahabat Allah kecuali Abraham, so pasti kita2 sendiri sebagai anak Tuhan jg disebut sebagai sahabatNya <img src="http://didia.wordpress.com/wp-includes/images/smilies/icon_smile.gif" alt=")" class="wp-smiley" /> ada koQ ayatnya tapih seperti biasa sayah lupa bwakakakakak *ketahuan malesnya* nahhhhhhh jadih berhubung status kita sama dengan Abraham dalam artian sama2 sahabat Allah, gimana sih biar kehidupan kita kek Abraham gto loh…. selalu dekat dengan Tuhan, diberkati Tuhan, deelel… berhubung ayat2 yg dibagiin ma pdtnya <strike>ilang</strike> g dah lupa huahua jdnya cm inget ada 3 poin la intinya <img src="http://didia.wordpress.com/wp-includes/images/smilies/icon_biggrin.gif" alt="D" class="wp-smiley" /><br />
<b> 1. Selalu percaya ma Tuhan</b><br />
kayak Abraham, dia selalu percaya ma Tuhan, wkt Tuhan blg istrinya Sarah akan mengandung di usia Sarah yg ke 90an ya? *loh kok malah balek nanya wekekek* si Abraham tanpa neko2 tanpa ngmg byk ke Tuhan, dia hanya percaya pada Tuhan, tus wkt Tuhan minta Abraham mempersembahkan anaknya Ishak, dia jg nurut aja tanpa neko2 tanpa negosiasi ma Tuhan dl, padahal dia bisa aja nego ma Tuhan kek wkt Tuhan mo musnahin kota Sodom. intinya harus percaya aja deh *maksa* :p</p>
<p><b> 2. Selalu mengasihi Tuhan lebih dr apapun</b><br />
nah klo ini dah jelas bgt deh Tuhan ingin kita mengasihi Dia lebih dr apapun jg <img src="http://didia.wordpress.com/wp-includes/images/smilies/icon_smile.gif" alt=")" class="wp-smiley" /> jd Dia itu selalu diatas istri/suami/keluarga/karir. pokoknya Tuhan selalu yg d first deh… huehue kisah Abraham mana yg pdt itu bahas? lagi2 <strike>ngilang</strike> lupa hehehe *jemaat teladan* :p</p>
<p><b> 3. Mengasihi yatim piatu &amp; janda2 (manusia)</b><br />
nah yg ini nih g inget :p Yak 1:27 I<i>badah yang murni dan yang tak bercacat di hadapan Allah, Bapa kita, ialah mengunjungi yatim piatu dan janda-janda dalam kesusahan mereka, dan menjaga supaya dirinya sendiri tidak dicemarkan oleh dunia</i>“. oiya ktnya definisi janda-janda yg di dalam Alkitab itu adalah wanita yg ditinggal mati oleh suaminya dan tetap menjaga kesendiriannya hingga umur 60 itu baru di sebut janda <img src="http://didia.wordpress.com/wp-includes/images/smilies/icon_biggrin.gif" alt="D" class="wp-smiley" /> jd yah more or less kita harus care lah ma yatim piatu n jg janda, kek anak kecil yg pengamen2 itu jg termasup loh….</p>
<p>jadih apakah kita mo sungguh2 mjd sahabat Allah? seperti Tuhan sendiri telah menganggap kita sebagai sahabatNya?</p></div>
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		<title>Persahabatan Sejati</title>
		<link>http://juwitharawung.wordpress.com/2008/03/13/persahabatan-sejati/</link>
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		<pubDate>Thu, 13 Mar 2008 07:10:30 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

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		<description><![CDATA[*persahabatan sejati&#8230;.. 

Hanya&#8230; semenit diperlukan untuk mendapat sahabat baik&#8230; sejam untuk menghargainya&#8230; sehari untuk menyayanginya&#8230; tapi sepanjang hidup untuk melupakannya ,”bukan sepanjang hidup saja untuk melupakan orang2 yang qt sayangi tapi lebih dari itu, kehilangan adalah bagian dari hidup yang akan qt lalui tp apakah qt mampu memperjuangkannya? 

seorang teman ataupun sahabat tidak pernah mengenal [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=13&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p><span style="font-family:arial;font-size:130%;"><b>*<i>persahabatan sejati&#8230;..</i></b></span><i> </i><br />
<span style="font-family:arial;"><b></b><br />
Hanya&#8230; semenit diperlukan untuk mendapat sahabat baik&#8230; sejam untuk menghargainya&#8230; sehari untuk menyayanginya&#8230; tapi sepanjang hidup untuk melupakannya ,”bukan sepanjang hidup saja untuk melupakan orang2 yang qt sayangi tapi lebih dari itu, kehilangan adalah bagian dari hidup yang akan qt lalui tp apakah qt mampu memperjuangkannya? </span><br />
<span style="font-family:Arial;"></span><br />
<span style="font-family:arial;">seorang teman ataupun sahabat tidak pernah mengenal kata &#8216;melupakan&#8217;seorang sahabat tak akan pernah melupakan sahabatnya lagi, tapi mungkin karena jarak dan waktu yang membuat seseorang sejenak terlupakan,dam kesibukan untuk menggapai cita2,dan terus2 untuk memperbaiki diri itu yang membuat seolah waktu terasa sangat kurang, jadi jangan sekali-sekali menganggap seorang sahabat akan melupakan sahabatnya lagi&#8230;</p>
<p>seorang sahabat tidak mengenal kata melupakan,bukan kehidupan yang memiliki arti kalau kita ga&#8217; mengalami kekecewaan, ataupun bahagia,mungkin butuh waktu untuk melupakan org yang qt sayangi,lebih baik waktu yang menjawab semuanya daripada hidup qt yang terus tenggelam dlm semua hal yg bs membuat hidup qt hancur.</span><span id="more-13"></span><br />
<span style="font-family:arial;"><br />
mencintai tanpa syarat, berbicara tanpa perhatian, memberi tanpa alasan dan peduli tanpa pamrih..itu inti dr persahabatan sejati</span><br />
<span style="font-family:arial;"><br />
Berilah waktu utk itu , kamu akan memberi keceriaan kepada seseorang atau mungkin mengubah hidup mereka kepada yang lebih baik.. thx for being my friend!<i> I LOVE U FRIENDS&#8230;.</i></span></p>
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		<title>Persahabatan adalah Kasih Sayang Tanpa Syarat</title>
		<link>http://juwitharawung.wordpress.com/2008/03/13/bersukacita-dalam-tuhan/</link>
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		<pubDate>Thu, 13 Mar 2008 07:01:12 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
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		<description><![CDATA[Dalam menjalin sebuah persahabatan yang murni dan abadi ia memerlukan pengorbanan yang besar. Bila kita berkenalan dengan seseorang dan kita suka padanya maka kita pasti malu menjalin ikatan persahabatan yang kekal lama dengannya. Namun banyak dugaan dan rintangan yang akan mengiringi persahabatan itu sehinggakan ia boleh memusnahtan sebuah erti persahabatan.
Perubahan tanpa kompromi

Selama ini Mohsein ingatkan [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=12&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p align="justify"><font face="Arial" size="2">Dalam menjalin sebuah persahabatan yang murni dan abadi ia memerlukan pengorbanan yang besar. Bila kita berkenalan dengan seseorang dan kita suka padanya maka kita pasti malu menjalin ikatan persahabatan yang kekal lama dengannya. Namun banyak dugaan dan rintangan yang akan mengiringi persahabatan itu sehinggakan ia boleh memusnahtan sebuah erti persahabatan.</font></p>
<p><b><font face="Arial" size="2">Perubahan tanpa kompromi</font></p>
<p></b></p>
<p align="justify"><font face="Arial" size="2">Selama ini Mohsein ingatkan Rashdan adalah teman jati baginya. Mereka membesar bersama dan menghadiri sekolah yang sama.Mereka melalui saat gembira dan sedih bersama-sama. Mohsein masih ingat lagi bila Rashdan ditinggalkan oleh teman wanitanya. Mohseinlah tempat bagi Rashdan mengadu dan meluahkan perasaan kecewanya. Sebagai teman karib, Mohsein cuba memujuknya agar bertabah hati dan jangan terlalu bersedih.</font></p>
<p align="justify"><font face="Arial" size="2">Persahabatan erat antara Mohsein dan Rashdan amat bermakna bagi mereka berdua. Namun segala-galanya berubah dengan tiba-tiba. Rashdan sudah jarang menghubungi Mohsein lagi. Malah, &#8216;bayangnya&#8217; pun sudah jarang kelihatan. Lalu Mohsein cuba mendapatkan jawapan daripadanya tapi Rashdan hanya diam membisu tanpa berkata apa-apa.</font></p>
<p align="justify"><font face="Arial" size="2">Mohsein rasa hairan melihat sikap Rashdan. Apakah kesilapan Mohsein yang menyebabkan Rashdan bersikap dingin terhadapnya? Mohsein bagaikan memerah otaknya mencari punca Rashdan bersikap begitu. Akhirnya, seorang teman Mohsein memberitahunya Rashdan berasa kecewa kerana Mohsein dapat pekerjaan baru. &#8220;Rashdan fikir kamu dah berubah sekarang dan tidak sama seperti dulu lagi.&#8221; kata teman itu. Jelas Rashdan adalah seorang yang tidak dapat sesuaikan diri dengan perubahan yang berlaku.</font></p>
<p align="justify"><font face="Arial" size="2">Dalam kehidupan harian, perubahan adalah sesuatu yang tidak boleh dielakkan. Walaupun kita tidak terfikir ia akan berlaku namun semuanya adalah di luar kawalan kita. Umpamanya dalam kes Mohsein yang rumit ini. Mohsein baru saja memulakan keria di pejabat baru dan kerianya memerlukan dia berkorban masa. Jadual keria Mohsein amat sibuk sehinggakan dia jarang ada masa bersosial.</font></p>
<p align="justify"><font face="Arial" size="2">Mohsein terkejut dengan sikap Rashdan yang tidak faham kedudukannya sekarang. &#8220;Dia yang menggalakkan aku memohon bekerja di sini tapi sekarang dia rasa lain pulak. Segala-galanya terjawab selepas tiga bulan aku dapat tahu Rashdan juga ada memohon kerja di tempat yang sama tapi dia gagal,&#8221; ujar Mohsein.</font></p>
<p align="justify"><font face="Arial" size="2">Perubahan besar dalam kehidupan boleh memberi kesan dan menggugat sebuah persahabatan. Ini termasuk perubahan dalam kerjaya, percintaan dan perpindahan rumah. Kita perlu faham hidup ini tidak statik. Perubahan ialah sebahagian daripada realiti dalam hidup. Persahabatan memerlukan flesikbel dan boleh menerima sesuatu perubahan yang berlaku.</font></p>
<p align="justify"><font face="Arial" size="2">Perubahan besar yang berlaku sering melibatkan emosi. Oleh itu, Mohsein berpendapat dia perlu meluangkan masa agar dapat bersama Rashdan walaupun dia sibuk. &#8220;Mungkin aku dapat berjumpa dengan Rashdan di hari minggu.&#8221; katanya.</font></p>
<p><font face="Verdana" size="2"> </font></p>
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		<title>Sifat-sifat sahabat yang baik</title>
		<link>http://juwitharawung.wordpress.com/2008/03/13/sifat-sifa-sahabat-yang-baik/</link>
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		<pubDate>Thu, 13 Mar 2008 06:56:47 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
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		<guid isPermaLink="false">http://juwitharawung.wordpress.com/2008/03/13/sifat-sifa-sahabat-yang-baik/</guid>
		<description><![CDATA[SIFAT-SIFAT SEORANG SAHABAT BAIK
Orang yang mempunyai sahabat baik dan merupakan sahabat baik bagi
orang lain sesungguhnya adalah orang yang sangat kaya dan puas.
Persahabatan yang baik seharusnya menunjukkan ciri-ciri seperti
berikut ini :
1. Persahabatan yang baik tidak mementingkan diri sendiri.
Amsal 17:17 mengatakan bahwa,
&#8220;Seorang sahabat menaruh kasih setiap waktu.&#8221;
Karena itu persahabatan sejati tidak didasarkan pada syarat-
syarat yang berubah-ubah. Ada [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=11&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p>SIFAT-SIFAT SEORANG SAHABAT BAIK</p>
<p>Orang yang mempunyai sahabat baik dan merupakan sahabat baik bagi<br />
orang lain sesungguhnya adalah orang yang sangat kaya dan puas.</p>
<p>Persahabatan yang baik seharusnya menunjukkan ciri-ciri seperti<br />
berikut ini :<span id="more-11"></span></p>
<p>1. Persahabatan yang baik tidak mementingkan diri sendiri.</p>
<p>Amsal 17:17 mengatakan bahwa,</p>
<p>&#8220;Seorang sahabat menaruh kasih setiap waktu.&#8221;</p>
<p>Karena itu persahabatan sejati tidak didasarkan pada syarat-<br />
syarat yang berubah-ubah. Ada orang-orang yang berkata, &#8220;Saya</p>
<p>akan menjadi sahabatmu jika, atau apabila, atau sampai, atau</p>
<p>karena.&#8221; Semua ini adalah syarat-syarat dan syarat bisa berubah.</p>
<p>Tetapi sahabat sejati mengasihi setiap waktu. Seorang sahabat<br />
yang berkata, &#8220;Aku mengasihimu jika&#8221; atau &#8220;Aku mengasihimu bila&#8221;</p>
<p>bukan sahabat seperti yang dilukiskan oleh Alkitab. Sahabat<br />
sejati akan berkata, &#8220;Aku mengasihimu setiap waktu. Kasihku<br />
tidak bersyarat dan tidak mementingkan diri sendiri.&#8221;</p>
<p>2. Persahabatan sejati bersifat teguh.</p>
<p>Kembali Amsal 17:17 berkata bahwa,</p>
<p>&#8220;Seorang sahabat menaruh kasih setiap waktu.&#8221;</p>
<p>Sebuah penerbitan Inggris menawarkan hadiah bagi orang yang<br />
memberikan definisi terbaik tentang persahabatan. Sebuah definisi<br />
yang tercantum dalam sayembara terhormat itu adalah: &#8220;Seorang<br />
sahabat adalah orang yang menambah sukacita kita dan membagi<br />
kesedihan kita.&#8221; Definisi lain berbunyi, &#8220;Seorang sahabat adalah<br />
orang yang mengerti kita.&#8221; Tetapi definisi yang memenangkan<br />
hadiah dalam sayembara itu adalah: &#8220;Seorang sahabat adalah orang<br />
yang masuk pada saat dunia keluar.&#8221; Betapa benarnya definisi ini!</p>
<p>Jika Saudara ingin sungguh-sungguh mengetahui berapa banyak<br />
sahabat yang Saudara miliki dan siapa mereka, buatlah kesalahan<br />
dan lihatlah apa yang terjadi. Setelah Saudara mengetahui<br />
kesulitan, coba lihat berapa banyak kawan Saudara yang masih<br />
setia kapada Saudara. Persahabatan sejati itu teguh.</p>
<p>3. Persahabatan sejati bersedia berkorban.</p>
<p>Amsal 18:24 berkata,</p>
<p>&#8220;Ada teman yang mendatangkan kecelakaan, tetapi ada juga<br />
sahabat yang lebih karib daripada seorang saudara.&#8221;</p>
<p>Persahabatan sejati itu mahal, tetapi memang sepadan dengan<br />
nilainya. Kata Indian untuk sahabat berasal dari sebuah kata<br />
gabungan yang berarti &#8220;orang yang memikul kesusahanku pada<br />
pundaknya.&#8221; Jadi kalau saya ingin menjadi sahabat, saya harus<br />
hidup dengan bersedia berkorban bagi orang yang menerima<br />
persahabatan saya.</p>
<p>4. Persahabatan sejati bersifat menyucikan.</p>
<p>Amsal 27:17 berkata,</p>
<p>&#8220;Besi menajamkan besi, orang menajamkan sesamanya.&#8221;</p>
<p>Seorang sahabat sejati akan menjadikan Saudara orang yang lebih<br />
baik. Persahabatan sejati membuat hidup Saudara lebih maju,<br />
mempertajam kecerdasan Saudara dan membuat Saudara lebih giat.<br />
Saudara akan menjadi orang yang lebih baik dan lebih berguna<br />
karena persahabatan itu.</p>
<p>Persahabatan sejati tidak akan menumpulkan pengaruh Saudara atau<br />
menumpulkan kerohanian Saudara. Seorang sahabat sejati adalah orang<br />
yang cukup peduli sehingga ia akan menegur bila Saudara salah.</p>
<p>Alkitab berkata dalam Amsal 27:6,</p>
<p>&#8220;Seorang kawan memukul dengan maksud baik, tetapi seorang lawan<br />
mencium secara berlimpah-limpah.&#8221;</p>
<p>Sanjungan bukan persahabatan. Orang yang suka menyanjung sama dengan<br />
orang munafik. Seorang munafik mengatakan di belakang Saudara apa<br />
yang tidak akan dia ucapkan di muka Saudara, tetapi seorang<br />
penyanjung mengatakan di depan Saudara apa yang tidak akan ia<br />
katakan di belakang Saudara. Seorang sahabat sejati sebaliknya, ia<br />
bersifat jujur terhadap Saudara dan terhadap orang lain.</p>
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		<title>Persahabatan</title>
		<link>http://juwitharawung.wordpress.com/2008/03/13/persahabatan/</link>
		<comments>http://juwitharawung.wordpress.com/2008/03/13/persahabatan/#comments</comments>
		<pubDate>Thu, 13 Mar 2008 05:24:38 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

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		<description><![CDATA[
Persahabatan adalah istilah yang menggambarkan perilaku kerja sama dan saling mendukung antara dua atau lebih entitas sosial. Artikel ini memusatkan perhatian pada pemahaman yang khas dalam hubungan antar pribadi. Dalam pengertian ini, istilah &#8220;persahabatan&#8221; menggambarkan suatu hubungan yang melibatkan pengetahuan, penghargaan dan afeksi. Sahabat akan menyambut kehadiran sesamanya dan menunjukkan kesetiaan satu sama lain, seringkali hingga pada altruisme. selera mereka biasanya serupa dan mungkin saling bertemu, dan [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=9&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p><span style="font-family:Arial;font-size:13px;line-height:19px;" class="Apple-style-span">
<p style="line-height:1.5em;margin:0.4em 0 0.5em;"><b>Persahabatan</b> adalah istilah yang menggambarkan perilaku kerja sama dan saling mendukung antara dua atau lebih entitas sosial. Artikel ini memusatkan perhatian pada pemahaman yang khas dalam hubungan antar pribadi. Dalam pengertian ini, istilah &#8220;persahabatan&#8221; menggambarkan suatu <a href="http://id.wikipedia.org/w/index.php?title=Hubungan&amp;action=edit&amp;redlink=1" title="Hubungan (belum dibuat)" class="new">hubungan</a> yang melibatkan <a href="http://id.wikipedia.org/wiki/Pengetahuan" title="Pengetahuan">pengetahuan</a>, <a href="http://id.wikipedia.org/w/index.php?title=Penghargaan&amp;action=edit&amp;redlink=1" title="Penghargaan (belum dibuat)" class="new">penghargaan</a> dan <a href="http://id.wikipedia.org/wiki/Afeksi" title="Afeksi">afeksi</a>. Sahabat akan menyambut kehadiran sesamanya dan menunjukkan <a href="http://id.wikipedia.org/w/index.php?title=Kesetiaan&amp;action=edit&amp;redlink=1" title="Kesetiaan (belum dibuat)" class="new">kesetiaan</a> satu sama lain, seringkali hingga pada <a href="http://id.wikipedia.org/w/index.php?title=Altruisme&amp;action=edit&amp;redlink=1" title="Altruisme (belum dibuat)" class="new">altruisme</a>. <a href="http://id.wikipedia.org/w/index.php?title=Selera_%28estetika%29&amp;action=edit&amp;redlink=1" title="Selera (estetika) (belum dibuat)" class="new">selera</a> mereka biasanya serupa dan mungkin saling bertemu, dan mereka menikmati kegiatan-kegiatan yang mereka sukai. Mereka juga akan terlibat dalam <a href="http://id.wikipedia.org/w/index.php?title=Perilaku_manusia&amp;action=edit&amp;redlink=1" title="Perilaku manusia (belum dibuat)" class="new">perilaku</a> yang <a href="http://id.wikipedia.org/w/index.php?title=Mutualisme&amp;action=edit&amp;redlink=1" title="Mutualisme (belum dibuat)" class="new">saling menolong</a>, seperti tukar-menukar nasihat dan saling menolong dalam kesulitan. Sahabat adalah orang yang memperlihatkan perilaku yang berbalasan dan reflektif. Namun bagi banyak orang, persahabatan seringkali tidak lebih daripada kepercayaan bahwa seseorang atau sesuatu tidak akan merugikan atau menyakiti mereka.</p>
<p><span id="more-9"></span>
<p style="line-height:1.5em;margin:0.4em 0 0.5em;">Nilai yang terdapat dalam persahabatan seringkali apa yang dihasilkan ketika seorang sahabat memperlihatkan secara konsisten:</p>
<ul>
<li>kecenderungan untuk <a href="http://id.wikipedia.org/w/index.php?title=Keinginan&amp;action=edit&amp;redlink=1" title="Keinginan (belum dibuat)" class="new">menginginkan</a> apa yang <a href="http://id.wikipedia.org/w/index.php?title=Kepentingan_pribadi&amp;action=edit&amp;redlink=1" title="Kepentingan pribadi (belum dibuat)" class="new">terbaik bagi satu sama lain</a>.</li>
<li><a href="http://id.wikipedia.org/w/index.php?title=Simpati&amp;action=edit&amp;redlink=1" title="Simpati (belum dibuat)" class="new">simpati</a> dan <a href="http://id.wikipedia.org/wiki/Empati" title="Empati">empati</a>.</li>
<li><a href="http://id.wikipedia.org/w/index.php?title=Kejujuran&amp;action=edit&amp;redlink=1" title="Kejujuran (belum dibuat)" class="new">kejujuran</a>, barangkali dalam keadaan-keadaan yang sulit bagi orang lain untuk mengucapkan <a href="http://id.wikipedia.org/wiki/Kebenaran" title="Kebenaran">kebenaran</a>.</li>
<li>saling <a href="http://id.wikipedia.org/w/index.php?title=Pengertian&amp;action=edit&amp;redlink=1" title="Pengertian (belum dibuat)" class="new">pengertian</a>.</li>
</ul>
<p style="line-height:1.5em;margin:0.4em 0 0.5em;">Seringkali ada anggapan bahwa sahabat sejati sanggup mengungkapkan <a href="http://id.wikipedia.org/w/index.php?title=Emosi&amp;action=edit&amp;redlink=1" title="Emosi (belum dibuat)" class="new">perasaan-perasaan</a> yang terdalam, yang mungkin tidak dapat diungkapkan, kecuali dalam keadaan-keadaan yang sangat sulit, ketika mereka datang untuk menolong. Dibandingkan dengan <a href="http://id.wikipedia.org/w/index.php?title=Hubungan_antar-pribadi&amp;action=edit&amp;redlink=1" title="Hubungan antar-pribadi (belum dibuat)" class="new">hubungan pribadi</a>, persahabatan dianggap lebih dekat daripada sekadar kenalan, meskipun dalam persahabatan atau hubungan antar kenalan terdapat tingkat <a href="http://id.wikipedia.org/w/index.php?title=Keintiman&amp;action=edit&amp;redlink=1" title="Keintiman (belum dibuat)" class="new">keintiman</a> yang berbeda-beda. Bagi banyak orang, persahabatan dan hubungan antar kenalan terdapat dalam kontinum yang sama.</p>
<div><br class="webkit-block-placeholder" /></div>
<p></span></p>
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		<title>Akibat Pergaulan Bebas</title>
		<link>http://juwitharawung.wordpress.com/2008/03/13/akibat-pergaulan-bebas/</link>
		<comments>http://juwitharawung.wordpress.com/2008/03/13/akibat-pergaulan-bebas/#comments</comments>
		<pubDate>Thu, 13 Mar 2008 05:02:34 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://juwitharawung.wordpress.com/2008/03/13/akibat-pergaulan-bebas/</guid>
		<description><![CDATA[Tingginya Penderita HIV/AIDS Akibat Pergaulan Bebas
Kapanlagi.com &#8211; Tingginya kasus penyakit Human Immunodeficiany Virus/Acquired Immnune Deficiency Syndrome (HIV/AIDS), khususnya pada kelompok umur remaja, salah satu penyebabnya akibat pergaulan bebas.
Selain hilangnya kekebalan daya tubuh, pergaulan bebas juga dapat menyebabkan terjadinya kehamilan di luar nikah, kata Kepala BKKBN Propinsi Bali, I Gede Putu Abadi, MPA di Denpasar, Senin [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=8&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p>Tingginya Penderita HIV/AIDS Akibat Pergaulan Bebas<br />
Kapanlagi.com &#8211; Tingginya kasus penyakit Human Immunodeficiany Virus/Acquired Immnune Deficiency Syndrome (HIV/AIDS), khususnya pada kelompok umur remaja, salah satu penyebabnya akibat pergaulan bebas.<br />
Selain hilangnya kekebalan daya tubuh, pergaulan bebas juga dapat menyebabkan terjadinya kehamilan di luar nikah, kata Kepala BKKBN Propinsi Bali, I Gede Putu Abadi, MPA di Denpasar, Senin (24/10).</p>
<p>Dalam sambutan tertulis dibacakan Kepala Balai Latihan dan Pengembangan, Ida Bagus Wirama, SH ketika membuka pelatihan managemen pusat informasi dan konsultasi kesehatan reproduksi remaja bagi relawan dan pengelola, ia menyatakan, kondisi tersebut cukup memprihatinkan.</p>
<p>Hasil penelitian di 12 kota di Indonesia termasuk Denpasar menunjukkan 10-31% remaja yang belum menikah sudah pernah melakukan hubungan seksual.</p>
<p>Di kota Denpasar dari 633 pelajar Sekolah Menengah Tingkat Atas (SLTA) yang baru duduk di kelas II, 155 orang atau 23,4% mempunyai pengalaman hubungan seksual.</p>
<p>Mereka terdiri atas putra 27% dan putri 18%. Data statistik nasional mengenai penderita HIV/AIDS di Indonesia menunjukkan bahwa sekitar 75% terjangkit hilangnya kekebalan daya tubuh pada usia remaja.</p>
<p>Demikian pula masalah remaja terhadap penyalahgunaan narkoba semakin memprihatinkan, ujar Putu Abadi.</p>
<p>Berdasarkan data penderita HIV/AIDS di Bali hingga Pebruari 2005 tercatat 623 orang, sebagian besar menyerang usia produktif. Penderita tersebut terdiri atas usia 5-14 tahun satu orang, usia 15-19 tahun 21 orang, usia 20-29 tahun 352 orang, usia 30-39 tahun 185 orang, usia 40-49 tahun 52 orang dan 50 tahun ke atas satu orang.</p>
<p>Putu Abadi menambahkan, semakin memprihatinkan penderita HIV/AIDS memberikan gambaran bahwa, cukup banyak permasalahan kesehatan reproduksi yang timbul diantara remaja. Oleh sebab itu mengembangan model pusat informasi dan konsultasi kesehatan reproduksi remaja melalui pendidik (konselor) sebaya menjadi sangat penting.</p>
<p>&#8220;Pusat informasi dan konsultasi kesehatan reproduksi remaja menjadi model pemberdayaan masyarakat yang bertujuan menumbuhkan kesadaran dan peranserta individu memberikan solusi kepada teman sebaya yang mengalami masalah kesehatan reproduksi,&#8221; ujar Putu Abadi.</p>
<p>Pelatihan Managemen tersebut diikuti 24 peserta utusan dari delapan kabupaten dan satu kota di Bali berlangsung selama empat hari. (*/lpk)</p>
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		<title>AbOrSi</title>
		<link>http://juwitharawung.wordpress.com/2008/03/01/aborsi/</link>
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		<pubDate>Sat, 01 Mar 2008 00:22:04 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
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		<description><![CDATA[ABORSI = MEMBUNUH KARYA ALLAH
Jakarta&#8211;bkkbn online; Pengguguran janin (aborsi) merupakan tindakan menghentikan karya Allah. Bahkan dapat dikatakan membunuh buah karya Allah. Karena itu Kristen secara tegas melarang aborsi.
Demikian pandangan Kristen tentang aborsi sebagaimana dimuat dalam buku ”Keluarga Bahagia Sejahtera dan Bertanggung Jawab Perspektif Agama Kristen”. Buku setebal 77 halaman ini diterbitkan oleh Persekutuan Gereja-Gereja di [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=7&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p><font><b><font>ABORSI = MEMBUNUH KARYA ALLAH</font></b></font></p>
<p><font>Jakarta&#8211;bkkbn online; Pengguguran janin (aborsi) merupakan tindakan menghentikan karya Allah. Bahkan dapat dikatakan membunuh buah karya Allah. Karena itu Kristen secara tegas melarang aborsi.</font></p>
<p><font>Demikian pandangan Kristen tentang aborsi sebagaimana dimuat dalam buku ”Keluarga Bahagia Sejahtera dan Bertanggung Jawab Perspektif Agama Kristen”. Buku setebal 77 halaman ini diterbitkan oleh Persekutuan Gereja-Gereja di Indonesia bekerja sama dengan BKKBN dan UNFPA (Dana Kependudukan PBB).</font><span id="more-7"></span></p>
<p><font>”Setiap pelaku aborsi adalah pembunuh nyawa manusia di hadapan Allah. Aborsi adalah soal pencabutan nyawa manusia dan penumpahan darah insani ciptaan Allah,” ujar Pdt. Weinata Sairin MTh, wakil sekretaris umum Majelis Pekerja Harian Persekutuan Gereja-Gereja di Indonesia, dengan lebih tegas.</font></p>
<p><font>Manakala dalam sebuah keluarga yang sah terjadi kehamilan yang tidak direncanakan, menurut Weinata, janin tersebut harus mutlak dipelihara. ”Pewahyuan dalam Perjanjian Lama yang diwarisi dan diterima gereja memberikan bukti nyata, bahwa kehidupan dalam rahim dianggap kudus,” tutur Weinata.</font></p>
<p><font>Musa dalam (UI 28:2-6) menyatakan, ”Segala berkat ini akan datang kepadamu dan menjadi bagianmu, jika engkau mendengarkan suara Tuhan, Allahmu: &#8230; Diberkatilah buah kandunganmu&#8230;” (sara)</font></p>
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		<title>Protein</title>
		<link>http://juwitharawung.wordpress.com/2008/02/28/protein/</link>
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		<pubDate>Thu, 28 Feb 2008 05:16:54 +0000</pubDate>
		<dc:creator>juwitharawung</dc:creator>
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		<description><![CDATA[Protein





A representation of the 3D structure of myoglobin showing coloured alpha helices. This protein was the first to have its structure solved by X-ray crystallography.


This article is about a class of biomolecules.  For alternate uses, such as protein in nutrition, see Protein (disambiguation).
Proteins are large organic compounds made of amino acids arranged in a [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=juwitharawung.wordpress.com&blog=2603707&post=5&subd=juwitharawung&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><h1 class="firstHeading">Protein</h1>
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<div class="thumbinner" style="width: 202px"><a href="http://en.wikipedia.org/wiki/Image:Myoglobin.png" class="image" title="A representation of the 3D structure of myoglobin showing coloured alpha helices. This protein was the first to have its structure solved by X-ray crystallography."><img src="http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Myoglobin.png/200px-Myoglobin.png" alt="A representation of the 3D structure of myoglobin showing coloured alpha helices. This protein was the first to have its structure solved by X-ray crystallography." class="thumbimage" border="0" height="221" width="200" /></a></p>
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<p>A representation of the 3D structure of <a href="http://en.wikipedia.org/wiki/Myoglobin" title="Myoglobin">myoglobin</a> showing coloured <a href="http://en.wikipedia.org/wiki/Alpha_helix" title="Alpha helix">alpha helices</a>. This protein was the first to have its structure solved by <a href="http://en.wikipedia.org/wiki/X-ray_crystallography" title="X-ray crystallography">X-ray crystallography</a>.</div>
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<div class="dablink">This article is about a class of biomolecules.  For alternate uses, such as <a href="http://en.wikipedia.org/wiki/Protein_in_nutrition" title="Protein in nutrition">protein in nutrition</a>, see <a href="http://en.wikipedia.org/wiki/Protein_%28disambiguation%29" title="Protein (disambiguation)">Protein (disambiguation)</a>.</div>
<p><b>Proteins</b> are large <a href="http://en.wikipedia.org/wiki/Organic_compound" title="Organic compound">organic compounds</a> made of <a href="http://en.wikipedia.org/wiki/Amino_acid" title="Amino acid">amino acids</a> arranged in a linear chain and joined together by <a href="http://en.wikipedia.org/wiki/Peptide_bond" title="Peptide bond">peptide bonds</a> between the <a href="http://en.wikipedia.org/wiki/Carboxyl" class="mw-redirect" title="Carboxyl">carboxyl</a> and <a href="http://en.wikipedia.org/wiki/Amino" class="mw-redirect" title="Amino">amino</a> groups of adjacent amino acid <a href="http://en.wikipedia.org/wiki/Residue_%28chemistry%29" title="Residue (chemistry)">residues</a>. The sequence of amino acids in a protein is defined by a <a href="http://en.wikipedia.org/wiki/Gene" title="Gene">gene</a> and encoded in the <a href="http://en.wikipedia.org/wiki/Genetic_code" title="Genetic code">genetic code</a>. Although this genetic code specifies 20 &#8220;standard&#8221; amino acids plus <a href="http://en.wikipedia.org/wiki/Selenocysteine" title="Selenocysteine">selenocysteine</a> and &#8211; in certain archaea &#8211; <a href="http://en.wikipedia.org/wiki/Pyrrolysine" title="Pyrrolysine">pyrrolysine</a>, the residues in a protein are sometimes chemically altered in <a href="http://en.wikipedia.org/wiki/Post-translational_modification" class="mw-redirect" title="Post-translational modification">post-translational modification</a>: either before the protein can function in the <a href="http://en.wikipedia.org/wiki/Cell_%28biology%29" title="Cell (biology)">cell</a>, or as part of control mechanisms. Proteins can also work together to achieve a particular function, and they often associate to form stable <a href="http://en.wikipedia.org/wiki/Protein_complex" title="Protein complex">complexes</a>.</p>
<p>Like other biological <a href="http://en.wikipedia.org/wiki/Macromolecules" class="mw-redirect" title="Macromolecules">macromolecules</a> such as <a href="http://en.wikipedia.org/wiki/Polysaccharide" title="Polysaccharide">polysaccharides</a> and <a href="http://en.wikipedia.org/wiki/Nucleic_acid" title="Nucleic acid">nucleic acids</a>, proteins are essential parts of organisms and participate in every process within <a href="http://en.wikipedia.org/wiki/Cell_%28biology%29" title="Cell (biology)">cells</a>. Many proteins are <a href="http://en.wikipedia.org/wiki/Enzyme" title="Enzyme">enzymes</a> that <a href="http://en.wikipedia.org/wiki/Catalysis" title="Catalysis">catalyze</a> biochemical reactions and are vital to <a href="http://en.wikipedia.org/wiki/Metabolism" title="Metabolism">metabolism</a>. Proteins also have structural or mechanical functions, such as <a href="http://en.wikipedia.org/wiki/Actin" title="Actin">actin</a> and <a href="http://en.wikipedia.org/wiki/Myosin" title="Myosin">myosin</a> in muscle and the proteins in the <a href="http://en.wikipedia.org/wiki/Cytoskeleton" title="Cytoskeleton">cytoskeleton</a>, which form a system of <a href="http://en.wikipedia.org/wiki/Scaffolding" title="Scaffolding">scaffolding</a> that maintains cell shape. Other proteins are important in <a href="http://en.wikipedia.org/wiki/Cell_signaling" title="Cell signaling">cell signaling</a>, <a href="http://en.wikipedia.org/wiki/Antibody" title="Antibody">immune responses</a>, <a href="http://en.wikipedia.org/wiki/Cell_adhesion" title="Cell adhesion">cell adhesion</a>, and the <a href="http://en.wikipedia.org/wiki/Cell_cycle" title="Cell cycle">cell cycle</a>. Proteins are also necessary in animals&#8217; diets, since animals cannot synthesize all the amino acids they need and must obtain <a href="http://en.wikipedia.org/wiki/Essential_amino_acid" title="Essential amino acid">essential amino acids</a> from food. Through the process of <a href="http://en.wikipedia.org/wiki/Digestion" title="Digestion">digestion</a>, animals break down ingested protein into free amino acids that are then used in metabolism.</p>
<p>The word <i>protein</i> comes from the <a href="http://en.wikipedia.org/wiki/Greek_language" title="Greek language">Greek</a> word <i>πρώτα</i> (&#8220;prota&#8221;), meaning &#8220;of primary importance.&#8221; Proteins were first described and named by the Swedish chemist <a href="http://en.wikipedia.org/wiki/J%C3%B6ns_Jakob_Berzelius" title="Jöns Jakob Berzelius">Jöns Jakob Berzelius</a> in 1838. However, central role of proteins in living organisms was not fully appreciated until 1926, when <a href="http://en.wikipedia.org/wiki/James_B._Sumner" title="James B. Sumner">James B. Sumner</a> showed that the enzyme <a href="http://en.wikipedia.org/wiki/Urease" title="Urease">urease</a> was a protein.<sup id="_ref-0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-0">[1]</a></sup> The first protein to be sequenced was <a href="http://en.wikipedia.org/wiki/Insulin" title="Insulin">insulin</a>, by <a href="http://en.wikipedia.org/wiki/Frederick_Sanger" title="Frederick Sanger">Frederick Sanger</a>, who won the Nobel Prize for this achievement in 1958. The first protein structures to be solved included <a href="http://en.wikipedia.org/wiki/Hemoglobin" title="Hemoglobin">hemoglobin</a> and <a href="http://en.wikipedia.org/wiki/Myoglobin" title="Myoglobin">myoglobin</a>, by <a href="http://en.wikipedia.org/wiki/Max_Perutz" title="Max Perutz">Max Perutz</a> and <a href="http://en.wikipedia.org/wiki/John_Kendrew" title="John Kendrew">Sir John Cowdery Kendrew</a>, respectively, in 1958.<sup id="_ref-1" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-1">[2]</a></sup><sup id="_ref-2" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-2">[3]</a></sup> The three-dimensional structures of both proteins were first determined by x-ray diffraction analysis; the structures of myoglobin and hemoglobin won the 1962 <a href="http://en.wikipedia.org/wiki/Nobel_Prize_in_Chemistry" title="Nobel Prize in Chemistry">Nobel Prize in Chemistry</a> for their discoverers.<span id="more-5"></span></p>
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<h2>Contents</h2>
<p><span class="toctoggle">[<a href="javascript:toggleToc()" class="internal" id="togglelink">hide</a>]</span></div>
<ul>
<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#Biochemistry"><span class="tocnumber">1</span> <span class="toctext">Biochemistry</span></a></li>
<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#Synthesis"><span class="tocnumber">2</span> <span class="toctext">Synthesis</span></a>
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<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Chemical_synthesis"><span class="tocnumber">2.1</span> <span class="toctext">Chemical synthesis</span></a></li>
</ul>
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<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#Structure_of_proteins"><span class="tocnumber">3</span> <span class="toctext">Structure of proteins</span></a>
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<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Structure_determination"><span class="tocnumber">3.1</span> <span class="toctext">Structure determination</span></a></li>
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<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#Cellular_functions"><span class="tocnumber">4</span> <span class="toctext">Cellular functions</span></a>
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<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Enzymes"><span class="tocnumber">4.1</span> <span class="toctext">Enzymes</span></a></li>
<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Cell_signaling_and_ligand_transport"><span class="tocnumber">4.2</span> <span class="toctext">Cell signaling and ligand transport</span></a></li>
<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Structural_proteins"><span class="tocnumber">4.3</span> <span class="toctext">Structural proteins</span></a></li>
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<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#Methods_of_study"><span class="tocnumber">5</span> <span class="toctext">Methods of study</span></a>
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<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Protein_purification"><span class="tocnumber">5.1</span> <span class="toctext">Protein purification</span></a></li>
<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Cellular_localization"><span class="tocnumber">5.2</span> <span class="toctext">Cellular localization</span></a></li>
<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Proteomics_and_bioinformatics"><span class="tocnumber">5.3</span> <span class="toctext">Proteomics and bioinformatics</span></a></li>
<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Structure_prediction_and_simulation"><span class="tocnumber">5.4</span> <span class="toctext">Structure prediction and simulation</span></a></li>
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<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#Nutrition"><span class="tocnumber">6</span> <span class="toctext">Nutrition</span></a></li>
<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#History"><span class="tocnumber">7</span> <span class="toctext">History</span></a></li>
<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#See_also"><span class="tocnumber">8</span> <span class="toctext">See also</span></a></li>
<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#References"><span class="tocnumber">9</span> <span class="toctext">References</span></a></li>
<li class="toclevel-1"><a href="http://en.wikipedia.org/wiki/Protein#External_links"><span class="tocnumber">10</span> <span class="toctext">External links</span></a>
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<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Databases_and_projects"><span class="tocnumber">10.1</span> <span class="toctext">Databases and projects</span></a></li>
<li class="toclevel-2"><a href="http://en.wikipedia.org/wiki/Protein#Tutorials_and_educational_websites"><span class="tocnumber">10.2</span> <span class="toctext">Tutorials and educational websites</span></a></li>
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<p><script type="text/javascript"> //<![CDATA[  if (window.showTocToggle) { var tocShowText = "show"; var tocHideText = "hide"; showTocToggle(); }  //]]&gt; </script><a name="Biochemistry" id="Biochemistry"></a></p>
<h2><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=1" title="Edit section: Biochemistry">edit</a>]</span> <span class="mw-headline">Biochemistry</span></h2>
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<div class="noprint relarticle mainarticle"><i>Main articles: <a href="http://en.wikipedia.org/wiki/Amino_acid" title="Amino acid">Amino acid</a> and <a href="http://en.wikipedia.org/wiki/Peptide_bond" title="Peptide bond">peptide bond</a></i></div>
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<div class="thumbinner" style="width: 302px"><a href="http://en.wikipedia.org/wiki/Image:Peptide_group_resonance.png" class="image" title="Resonance structures of the peptide bond that links individual amino acids to form a protein polymer."><img src="http://upload.wikimedia.org/wikipedia/en/thumb/1/17/Peptide_group_resonance.png/300px-Peptide_group_resonance.png" alt="Resonance structures of the peptide bond that links individual amino acids to form a protein polymer." class="thumbimage" border="0" height="65" width="300" /></a></p>
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<p><a href="http://en.wikipedia.org/wiki/Resonance_%28chemistry%29" title="Resonance (chemistry)">Resonance</a> structures of the <a href="http://en.wikipedia.org/wiki/Peptide_bond" title="Peptide bond">peptide bond</a> that links individual amino acids to form a protein <a href="http://en.wikipedia.org/wiki/Polymer" title="Polymer">polymer</a>.</div>
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<div class="thumbinner" style="width: 302px"><a href="http://en.wikipedia.org/wiki/Image:Peptide_bond.jpg" class="image" title="Section of a protein structure showing serine and alanine residues linked together by peptide bonds. Carbons are shown in white and hydrogens are omitted for clarity."><img src="http://upload.wikimedia.org/wikipedia/en/thumb/b/ba/Peptide_bond.jpg/300px-Peptide_bond.jpg" alt="Section of a protein structure showing serine and alanine residues linked together by peptide bonds. Carbons are shown in white and hydrogens are omitted for clarity." class="thumbimage" border="0" height="211" width="300" /></a></p>
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<p>Section of a protein structure showing serine and alanine residues linked together by peptide bonds. Carbons are shown in white and hydrogens are omitted for clarity.</p></div>
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<p>Proteins are linear polymers built from 20 different <small>L</small>-α-<a href="http://en.wikipedia.org/wiki/Amino_acid" title="Amino acid">amino acids</a>. All amino acids possess common structural features, including an <a href="http://en.wikipedia.org/wiki/Alpha_carbon" title="Alpha carbon">α carbon</a> to which an <a href="http://en.wikipedia.org/wiki/Amino" class="mw-redirect" title="Amino">amino</a> group, a <a href="http://en.wikipedia.org/wiki/Carboxyl" class="mw-redirect" title="Carboxyl">carboxyl</a> group, and a variable <a href="http://en.wikipedia.org/wiki/Side_chain" title="Side chain">side chain</a> are <a href="http://en.wikipedia.org/wiki/Chemical_bond" title="Chemical bond">bonded</a>. Only proline differs from this basic structure as it contains an unusual ring to the N-end amine group, which forces the CO–NH amide moiety into a fixed conformation.<sup id="_ref-3" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-3">[4]</a></sup> The side chains of the standard amino acids, detailed in the <a href="http://en.wikipedia.org/wiki/List_of_standard_amino_acids" title="List of standard amino acids">list of standard amino acids</a>, have different chemical properties that produce three-dimensional protein structure and are therefore critical to protein function. The amino acids in a polypeptide chain are linked by <a href="http://en.wikipedia.org/wiki/Peptide_bond" title="Peptide bond">peptide bonds</a> formed in a <a href="http://en.wikipedia.org/wiki/Dehydration_reaction" title="Dehydration reaction">dehydration reaction</a>. Once linked in the protein chain, an individual amino acid is called a <i>residue,</i> and the linked series of carbon, nitrogen, and oxygen atoms are known as the <i>main chain</i> or <i>protein backbone.</i> The peptide bond has two <a href="http://en.wikipedia.org/wiki/Resonance_%28chemistry%29" title="Resonance (chemistry)">resonance</a> forms that contribute some <a href="http://en.wikipedia.org/wiki/Double-bond" class="mw-redirect" title="Double-bond">double-bond</a> character and inhibit rotation around its axis, so that the alpha carbons are roughly <a href="http://en.wikipedia.org/wiki/Coplanar" class="mw-redirect" title="Coplanar">coplanar</a>. The other two <a href="http://en.wikipedia.org/wiki/Dihedral_angle" title="Dihedral angle">dihedral angles</a> in the peptide bond determine the local shape assumed by the protein backbone.</p>
<p>Due to the chemical structure of the individual amino acids, the protein chain has directionality. The end of the protein with a free carboxyl group is known as the <a href="http://en.wikipedia.org/wiki/C-terminus" title="C-terminus">C-terminus</a> or carboxy terminus, whereas the end with a free amino group is known as the <a href="http://en.wikipedia.org/wiki/N-terminus" title="N-terminus">N-terminus</a> or amino terminus.</p>
<p>The words <i>protein</i>, <i><a href="http://en.wikipedia.org/wiki/Polypeptide" class="mw-redirect" title="Polypeptide">polypeptide</a>,</i> and <i><a href="http://en.wikipedia.org/wiki/Peptide" title="Peptide">peptide</a></i> are a little ambiguous and can overlap in meaning. <i>Protein</i> is generally used to refer to the complete biological molecule in a stable <a href="http://en.wikipedia.org/wiki/Tertiary_structure" title="Tertiary structure">conformation</a>, whereas <i>peptide</i> is generally reserved for a short amino acid oligomers often lacking a stable three-dimensional structure. However, the boundary between the two is not well defined and usually lies near 20–30 residues.<sup id="_ref-Lodish_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Lodish">[5]</a></sup> <i>Polypeptide</i> can refer to any single linear chain of amino acids, usually regardless of length, but often implies an absence of a defined <a href="http://en.wikipedia.org/wiki/Tertiary_structure" title="Tertiary structure">conformation</a>.</p>
<p><a name="Synthesis" id="Synthesis"></a></p>
<h2><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=2" title="Edit section: Synthesis">edit</a>]</span> <span class="mw-headline">Synthesis</span></h2>
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<div class="noprint relarticle mainarticle"><i>Main article: <a href="http://en.wikipedia.org/wiki/Protein_biosynthesis" title="Protein biosynthesis">Protein biosynthesis</a></i></div>
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<div class="thumbinner" style="width: 302px"><a href="http://en.wikipedia.org/wiki/Image:Genetic_code.svg" class="image" title="The DNA sequence of a gene encodes the amino acid sequence of a protein."><img src="http://upload.wikimedia.org/wikipedia/commons/thumb/3/37/Genetic_code.svg/300px-Genetic_code.svg.png" alt="The DNA sequence of a gene encodes the amino acid sequence of a protein." class="thumbimage" border="0" height="114" width="300" /></a></p>
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<p>The <a href="http://en.wikipedia.org/wiki/DNA" title="DNA">DNA</a> sequence of a gene <a href="http://en.wikipedia.org/wiki/Genetic_code" title="Genetic code">encodes</a> the <a href="http://en.wikipedia.org/wiki/Amino_acid" title="Amino acid">amino acid</a> sequence of a protein.</div>
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<p>Proteins are assembled from amino acids using information encoded in <a href="http://en.wikipedia.org/wiki/Gene" title="Gene">genes</a>. Each protein has its own unique amino acid sequence that is specified by the <a href="http://en.wikipedia.org/wiki/Nucleotide" title="Nucleotide">nucleotide</a> sequence of the gene encoding this protein. The <a href="http://en.wikipedia.org/wiki/Genetic_code" title="Genetic code">genetic code</a> is a set of three-nucleotide sets called <a href="http://en.wikipedia.org/wiki/Codon" class="mw-redirect" title="Codon">codons</a> and each three-nucleotide combination stands for an amino acid, for example AUG stands for <a href="http://en.wikipedia.org/wiki/Methionine" title="Methionine">methionine</a>. Because <a href="http://en.wikipedia.org/wiki/DNA" title="DNA">DNA</a> contains four nucleotides, the total number of possible codons is 64; hence, there is some redundancy in the genetic code, with some amino acids specified by more than one codon. Genes encoded in DNA are first <a href="http://en.wikipedia.org/wiki/Transcription_%28genetics%29" title="Transcription (genetics)">transcribed</a> into pre-<a href="http://en.wikipedia.org/wiki/Messenger_RNA" title="Messenger RNA">messenger RNA</a> (mRNA) by proteins such as <a href="http://en.wikipedia.org/wiki/RNA_polymerase" title="RNA polymerase">RNA polymerase</a>. Most organisms then process the pre-mRNA (also known as a <i>primary transcript</i>) using various forms of <a href="http://en.wikipedia.org/wiki/Post-transcriptional_modification" title="Post-transcriptional modification">post-transcriptional modification</a> to form the mature mRNA, which is then used as a template for protein synthesis by the <a href="http://en.wikipedia.org/wiki/Ribosome" title="Ribosome">ribosome</a>. In <a href="http://en.wikipedia.org/wiki/Prokaryote" title="Prokaryote">prokaryotes</a> the mRNA may either be used as soon as it is produced, or be bound by a ribosome after having moved away from the <a href="http://en.wikipedia.org/wiki/Nucleoid" title="Nucleoid">nucleoid</a>. In contrast, <a href="http://en.wikipedia.org/wiki/Eukaryote" title="Eukaryote">eukaryotes</a> make mRNA in the <a href="http://en.wikipedia.org/wiki/Cell_nucleus" title="Cell nucleus">cell nucleus</a> and then translocate it across the <a href="http://en.wikipedia.org/wiki/Nuclear_membrane" class="mw-redirect" title="Nuclear membrane">nuclear membrane</a> into the <a href="http://en.wikipedia.org/wiki/Cytoplasm" title="Cytoplasm">cytoplasm</a>, where <a href="http://en.wikipedia.org/wiki/Protein_biosynthesis" title="Protein biosynthesis">protein synthesis</a> then takes place. The rate of protein synthesis is higher in prokaryotes than eukaryotes and can reach up to 20 amino acids per second.<sup id="_ref-Dobson_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Dobson">[6]</a></sup></p>
<p>The process of synthesizing a protein from an mRNA template is known as <a href="http://en.wikipedia.org/wiki/Translation_%28genetics%29" class="mw-redirect" title="Translation (genetics)">translation</a>. The mRNA is loaded onto the ribosome and is read three nucleotides at a time by matching each codon to its <a href="http://en.wikipedia.org/wiki/Base_pair" title="Base pair">base pairing</a> <a href="http://en.wikipedia.org/wiki/Anticodon" class="mw-redirect" title="Anticodon">anticodon</a> located on a <a href="http://en.wikipedia.org/wiki/Transfer_RNA" title="Transfer RNA">transfer RNA</a> molecule, which carries the amino acid corresponding to the codon it recognizes. The enzyme <a href="http://en.wikipedia.org/wiki/Aminoacyl_tRNA_synthetase" title="Aminoacyl tRNA synthetase">aminoacyl tRNA synthetase</a> &#8220;charges&#8221; the tRNA molecules with the correct amino acids. The growing polypeptide is often termed the <i>nascent chain</i>. Proteins are always biosynthesized from <a href="http://en.wikipedia.org/wiki/N-terminus" title="N-terminus">N-terminus</a> to <a href="http://en.wikipedia.org/wiki/C-terminus" title="C-terminus">C-terminus</a>.</p>
<p>The size of a synthesized protein can be measured by the number of amino acids it contains and by its total <a href="http://en.wikipedia.org/wiki/Molecular_mass" title="Molecular mass">molecular mass</a>, which is normally reported in units of <i>daltons</i> (synonymous with <a href="http://en.wikipedia.org/wiki/Atomic_mass_unit" title="Atomic mass unit">atomic mass units</a>), or the derivative unit kilodalton (kDa). <a href="http://en.wikipedia.org/wiki/Yeast" title="Yeast">Yeast</a> proteins are on average 466 amino acids long and 53 kDa in mass.<sup id="_ref-Lodish_1" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Lodish">[5]</a></sup> The largest known proteins are the <a href="http://en.wikipedia.org/wiki/Titin" title="Titin">titins</a>, a component of the <a href="http://en.wikipedia.org/wiki/Muscle" title="Muscle">muscle</a> <a href="http://en.wikipedia.org/wiki/Sarcomere" title="Sarcomere">sarcomere</a>, with a molecular mass of almost 3,000 kDa and a total length of almost 27,000 amino acids.<sup id="_ref-4" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-4">[7]</a></sup></p>
<p><a name="Chemical_synthesis" id="Chemical_synthesis"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=3" title="Edit section: Chemical synthesis">edit</a>]</span> <span class="mw-headline">Chemical synthesis</span></h3>
<p>Short proteins can also be synthesized chemically by a family of methods known as <a href="http://en.wikipedia.org/wiki/Peptide_synthesis" title="Peptide synthesis">peptide synthesis</a>, which rely on <a href="http://en.wikipedia.org/wiki/Organic_synthesis" title="Organic synthesis">organic synthesis</a> techniques such as <a href="http://en.wikipedia.org/wiki/Chemical_ligation" title="Chemical ligation">chemical ligation</a> to produce peptides in high yield.<sup id="_ref-5" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-5">[8]</a></sup> Chemical synthesis allows for the introduction of non-natural amino acids into polypeptide chains, such as attachment of <a href="http://en.wikipedia.org/wiki/Fluorescent" class="mw-redirect" title="Fluorescent">fluorescent</a> probes to amino acid side chains.<sup id="_ref-6" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-6">[9]</a></sup> These methods are useful in laboratory <a href="http://en.wikipedia.org/wiki/Biochemistry" title="Biochemistry">biochemistry</a> and <a href="http://en.wikipedia.org/wiki/Cell_biology" title="Cell biology">cell biology</a>, though generally not for commercial applications. Chemical synthesis is inefficient for polypeptides longer than about 300 amino acids, and the synthesized proteins may not readily assume their native <a href="http://en.wikipedia.org/wiki/Tertiary_structure" title="Tertiary structure">tertiary structure</a>. Most chemical synthesis methods proceed from C-terminus to N-terminus, opposite the biological reaction.</p>
<p><a name="Structure_of_proteins" id="Structure_of_proteins"></a></p>
<h2><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=4" title="Edit section: Structure of proteins">edit</a>]</span> <span class="mw-headline">Structure of proteins</span></h2>
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<dd>
<div class="noprint relarticle mainarticle"><i>Main article: <a href="http://en.wikipedia.org/wiki/Protein_structure" title="Protein structure">Protein structure</a></i></div>
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<div class="thumbinner" style="width: 502px"><a href="http://en.wikipedia.org/wiki/Image:Proteinviews-1tim.png" class="image" title="Three possible representations of the three-dimensional structure of the protein triose phosphate isomerase. Left: all-atom representation colored by atom type. Middle: simplified representation illustrating the backbone conformation, colored by secondary structure. Right: Solvent-accessible surface representation colored by residue type (acidic residues red, basic residues blue, polar residues green, nonpolar residues white)."><img src="http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Proteinviews-1tim.png/500px-Proteinviews-1tim.png" alt="Three possible representations of the three-dimensional structure of the protein triose phosphate isomerase. Left: all-atom representation colored by atom type. Middle: simplified representation illustrating the backbone conformation, colored by secondary structure. Right: Solvent-accessible surface representation colored by residue type (acidic residues red, basic residues blue, polar residues green, nonpolar residues white)." class="thumbimage" border="0" height="200" width="500" /></a></p>
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<div class="magnify"><a href="http://en.wikipedia.org/wiki/Image:Proteinviews-1tim.png" class="internal" title="Enlarge"><img src="http://en.wikipedia.org/skins-1.5/common/images/magnify-clip.png" height="11" width="15" /></a></div>
<p>Three possible representations of the three-dimensional structure of the protein <a href="http://en.wikipedia.org/wiki/Triose_phosphate_isomerase" class="mw-redirect" title="Triose phosphate isomerase">triose phosphate isomerase</a>. Left: all-atom representation colored by atom type. Middle: simplified representation illustrating the backbone conformation, colored by secondary structure. Right: Solvent-accessible surface representation colored by residue type (acidic residues red, basic residues blue, polar residues green, nonpolar residues white).</div>
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<p>Most proteins <a href="http://en.wikipedia.org/wiki/Protein_folding" title="Protein folding">fold</a> into unique 3-dimensional structures. The shape into which a protein naturally folds is known as its <a href="http://en.wikipedia.org/wiki/Native_state" title="Native state">native state</a>. Although many proteins can fold unassisted simply through the structural propensities of their component amino acids, others require the aid of molecular <a href="http://en.wikipedia.org/wiki/Chaperone_%28protein%29" title="Chaperone (protein)">chaperones</a> to efficiently fold to their native states. Biochemists often refer to four distinct aspects of a protein&#8217;s structure:</p>
<ul>
<li><i><a href="http://en.wikipedia.org/wiki/Primary_structure" title="Primary structure">Primary structure</a></i>: the <a href="http://en.wikipedia.org/wiki/Peptide_sequence" title="Peptide sequence">amino acid sequence</a></li>
<li><i><a href="http://en.wikipedia.org/wiki/Secondary_structure" title="Secondary structure">Secondary structure</a></i>: regularly repeating local structures stabilized by <a href="http://en.wikipedia.org/wiki/Hydrogen_bond" title="Hydrogen bond">hydrogen bonds</a>. The most common examples are the <a href="http://en.wikipedia.org/wiki/Alpha_helix" title="Alpha helix">alpha helix</a> and <a href="http://en.wikipedia.org/wiki/Beta_sheet" title="Beta sheet">beta sheet</a>.<sup id="_ref-Branden_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Branden">[10]</a></sup> Because secondary structures are local, many regions of different secondary structure can be present in the same protein molecule.</li>
<li><i><a href="http://en.wikipedia.org/wiki/Tertiary_structure" title="Tertiary structure">Tertiary structure</a></i>: the overall shape of a single protein molecule; the spatial relationship of the secondary structures to one another. Tertiary structure is generally stabilized by nonlocal interactions, most commonly the formation of a <a href="http://en.wikipedia.org/wiki/Hydrophobic_core" class="mw-redirect" title="Hydrophobic core">hydrophobic core</a>, but also through <a href="http://en.wikipedia.org/wiki/Salt_bridge_%28protein%29" title="Salt bridge (protein)">salt bridges</a>, hydrogen bonds, <a href="http://en.wikipedia.org/wiki/Disulfide_bond" title="Disulfide bond">disulfide bonds</a>, and even <a href="http://en.wikipedia.org/wiki/Post-translational_modification" class="mw-redirect" title="Post-translational modification">post-translational modifications</a>. The term &#8220;tertiary structure&#8221; is often used as synonymous with the term <i>fold</i>.</li>
<li><i><a href="http://en.wikipedia.org/wiki/Quaternary_structure" title="Quaternary structure">Quaternary structure</a></i>: the shape or structure that results from the <a href="http://en.wikipedia.org/wiki/Protein-protein_interaction" title="Protein-protein interaction">interaction</a> of more than one protein molecule, usually called <i><a href="http://en.wikipedia.org/wiki/Protein_subunit" title="Protein subunit">protein subunits</a></i> in this context, which function as part of the larger assembly or <a href="http://en.wikipedia.org/wiki/Protein_complex" title="Protein complex">protein complex</a>.</li>
</ul>
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<div class="thumbinner" style="width: 152px"><a href="http://en.wikipedia.org/wiki/Image:Protein_Dynamics_Cytochrome_C_2NEW_smaller.gif" class="image" title="NMR structures of the protein cytochrome c in solution show the constantly shifting dynamic structure of the protein. Larger version."><img src="http://upload.wikimedia.org/wikipedia/en/a/ae/Protein_Dynamics_Cytochrome_C_2NEW_smaller.gif" alt="NMR structures of the protein cytochrome c in solution show the constantly shifting dynamic structure of the protein. Larger version." class="thumbimage" border="0" height="122" width="150" /></a></p>
<div class="thumbcaption">NMR structures of the protein <a href="http://en.wikipedia.org/wiki/Cytochrome_c" title="Cytochrome c">cytochrome c</a> in solution show the constantly shifting dynamic structure of the protein. <a href="http://en.wikipedia.org/wiki/Image:Protein_Dynamics_Cytochrome_C_2NEW_small.gif" title="Image:Protein Dynamics Cytochrome C 2NEW small.gif">Larger version</a>.</div>
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<p>Proteins are not entirely rigid molecules. In addition to these levels of structure, proteins may shift between several related structures while they perform their biological function. In the context of these functional rearrangements, these tertiary or quaternary structures are usually referred to as &#8220;<a href="http://en.wikipedia.org/wiki/Chemical_conformation" class="mw-redirect" title="Chemical conformation">conformations</a>,&#8221; and transitions between them are called <i>conformational changes.</i> Such changes are often induced by the binding of a <a href="http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29" title="Substrate (biochemistry)">substrate</a> molecule to an enzyme&#8217;s <a href="http://en.wikipedia.org/wiki/Active_site" title="Active site">active site</a>, or the physical region of the protein that participates in chemical catalysis. In solution all proteins also undergo variation in structure through thermal vibration and the collision with other molecules, see the animation on the right.</p>
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<div class="thumbinner" style="width: 502px"><a href="http://en.wikipedia.org/wiki/Image:Protein_Composite.jpg" class="image" title="Molecular surface of several proteins showing their comparative sizes. From left to right are: Antibody (IgG), Hemoglobin, Insulin (a hormone), Adenylate kinase (an enzyme), and Glutamine synthetase (an enzyme)."><img src="http://upload.wikimedia.org/wikipedia/commons/thumb/5/53/Protein_Composite.jpg/500px-Protein_Composite.jpg" alt="Molecular surface of several proteins showing their comparative sizes. From left to right are: Antibody (IgG), Hemoglobin, Insulin (a hormone), Adenylate kinase (an enzyme), and Glutamine synthetase (an enzyme)." class="thumbimage" border="0" height="144" width="500" /></a></p>
<div class="thumbcaption">
<div class="magnify"><a href="http://en.wikipedia.org/wiki/Image:Protein_Composite.jpg" class="internal" title="Enlarge"><img src="http://en.wikipedia.org/skins-1.5/common/images/magnify-clip.png" height="11" width="15" /></a></div>
<p>Molecular surface of several proteins showing their comparative sizes. From left to right are: <a href="http://en.wikipedia.org/wiki/Antibody" title="Antibody">Antibody</a> (IgG), <a href="http://en.wikipedia.org/wiki/Hemoglobin" title="Hemoglobin">Hemoglobin</a>, <a href="http://en.wikipedia.org/wiki/Insulin" title="Insulin">Insulin</a> (a hormone), <a href="http://en.wikipedia.org/wiki/Adenylate_kinase" title="Adenylate kinase">Adenylate kinase</a> (an enzyme), and <a href="http://en.wikipedia.org/wiki/Glutamine_synthetase" title="Glutamine synthetase">Glutamine synthetase</a> (an enzyme).</div>
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<p>Proteins can be informally divided into three main classes, which correlate with typical tertiary structures: <a href="http://en.wikipedia.org/wiki/Globular_protein" title="Globular protein">globular proteins</a>, <a href="http://en.wikipedia.org/wiki/Fibrous_protein" title="Fibrous protein">fibrous proteins</a>, and <a href="http://en.wikipedia.org/wiki/Membrane_protein" title="Membrane protein">membrane proteins</a>. Almost all globular proteins are <a href="http://en.wikipedia.org/wiki/Soluble" class="mw-redirect" title="Soluble">soluble</a> and many are enzymes. Fibrous proteins are often structural; membrane proteins often serve as <a href="http://en.wikipedia.org/wiki/Receptor_%28biochemistry%29" title="Receptor (biochemistry)">receptors</a> or provide channels for polar or charged molecules to pass through the cell membrane.</p>
<p>A special case of intramolecular hydrogen bonds within proteins, poorly shielded from water attack and hence promoting their own <a href="http://en.wikipedia.org/wiki/Dehydration" title="Dehydration">dehydration</a>, are called <a href="http://en.wikipedia.org/wiki/Dehydron" title="Dehydron">dehydrons</a>.</p>
<p><a name="Structure_determination" id="Structure_determination"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=5" title="Edit section: Structure determination">edit</a>]</span> <span class="mw-headline">Structure determination</span></h3>
<p>Discovering the tertiary structure of a protein, or the quaternary structure of its complexes, can provide important clues about how the protein performs its function. Common experimental methods of structure determination include <a href="http://en.wikipedia.org/wiki/X-ray_crystallography" title="X-ray crystallography">X-ray crystallography</a> and <a href="http://en.wikipedia.org/wiki/Protein_NMR" class="mw-redirect" title="Protein NMR">NMR spectroscopy</a>, both of which can produce information at <a href="http://en.wikipedia.org/wiki/Atom" title="Atom">atomic</a> resolution. <a href="http://en.wikipedia.org/wiki/Cryoelectron_microscopy" class="mw-redirect" title="Cryoelectron microscopy">Cryoelectron microscopy</a> is used to produce lower-resolution structural information about very large protein complexes, including assembled <a href="http://en.wikipedia.org/wiki/Virus" title="Virus">viruses</a>;<sup id="_ref-Branden_1" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Branden">[10]</a></sup> a variant known as <a href="http://en.wikipedia.org/wiki/Electron_crystallography" title="Electron crystallography">electron crystallography</a> can also produce high-resolution information in some cases, especially for two-dimensional crystals of membrane proteins.<sup id="_ref-7" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-7">[11]</a></sup> Solved structures are usually deposited in the <a href="http://en.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank">Protein Data Bank</a> (PDB), a freely available resource from which structural data about thousands of proteins can be obtained in the form of <a href="http://en.wikipedia.org/wiki/Cartesian_coordinates" class="mw-redirect" title="Cartesian coordinates">Cartesian coordinates</a> for each atom in the protein.</p>
<p>Many more gene sequences are known than protein structures. Further, the set of solved structures is biased toward proteins that can be easily subjected to the conditions required in <a href="http://en.wikipedia.org/wiki/X-ray_crystallography" title="X-ray crystallography">X-ray crystallography</a>, one of the major structure determination methods. In particular, globular proteins are comparatively easy to <a href="http://en.wikipedia.org/wiki/Crystallize" class="mw-redirect" title="Crystallize">crystallize</a> in preparation for X-ray crystallography. Membrane proteins, by contrast, are difficult to crystallize and are underrepresented in the PDB.<sup id="_ref-8" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-8">[12]</a></sup> <a href="http://en.wikipedia.org/wiki/Structural_genomics" title="Structural genomics">Structural genomics</a> initiatives have attempted to remedy these deficiencies by systematically solving representative structures of major fold classes. <a href="http://en.wikipedia.org/wiki/Protein_structure_prediction" title="Protein structure prediction">Protein structure prediction</a> methods attempt to provide a means of generating a plausible structure for proteins whose structures have not been experimentally determined.</p>
<p><a name="Cellular_functions" id="Cellular_functions"></a></p>
<h2><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=6" title="Edit section: Cellular functions">edit</a>]</span> <span class="mw-headline">Cellular functions</span></h2>
<p>Proteins are the chief actors within the cell, said to be carrying out the duties specified by the information encoded in genes.<sup id="_ref-Lodish_2" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Lodish">[5]</a></sup> With the exception of certain types of <a href="http://en.wikipedia.org/wiki/RNA" title="RNA">RNA</a>, most other biological molecules are relatively inert elements upon which proteins act. Proteins make up half the dry weight of an <i><a href="http://en.wikipedia.org/wiki/Escherichia_coli" title="Escherichia coli">Escherichia coli</a></i> cell, whereas other macromolecules such as DNA and RNA make up only 3% and 20%, respectively.<sup id="_ref-Voet_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Voet">[13]</a></sup> The set of proteins expressed in a particular cell or cell type is known as its <a href="http://en.wikipedia.org/wiki/Proteome" title="Proteome">proteome</a>.</p>
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<div class="thumbinner" style="width: 352px"><a href="http://en.wikipedia.org/wiki/Image:Hexokinase_ball_and_stick_model%2C_with_substrates_to_scale_copy.png" class="image" title="The enzyme hexokinase is shown as a simple ball-and-stick molecular model. To scale in the top right-hand corner are two of its substrates, ATP and glucose."><img src="http://upload.wikimedia.org/wikipedia/en/thumb/e/e7/Hexokinase_ball_and_stick_model%2C_with_substrates_to_scale_copy.png/350px-Hexokinase_ball_and_stick_model%2C_with_substrates_to_scale_copy.png" alt="The enzyme hexokinase is shown as a simple ball-and-stick molecular model. To scale in the top right-hand corner are two of its substrates, ATP and glucose." class="thumbimage" border="0" height="250" width="350" /></a></p>
<div class="thumbcaption">
<div class="magnify"><a href="http://en.wikipedia.org/wiki/Image:Hexokinase_ball_and_stick_model%2C_with_substrates_to_scale_copy.png" class="internal" title="Enlarge"><img src="http://en.wikipedia.org/skins-1.5/common/images/magnify-clip.png" height="11" width="15" /></a></div>
<p>The enzyme <a href="http://en.wikipedia.org/wiki/Hexokinase" title="Hexokinase">hexokinase</a> is shown as a simple ball-and-stick molecular model. To scale in the top right-hand corner are two of its substrates, <a href="http://en.wikipedia.org/wiki/Adenosine_triphosphate" title="Adenosine triphosphate">ATP</a> and <a href="http://en.wikipedia.org/wiki/Glucose" title="Glucose">glucose</a>.</div>
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<p>The chief characteristic of proteins that allows their diverse set of functions is their ability to bind other molecules specifically and tightly. The region of the protein responsible for binding another molecule is known as the <a href="http://en.wikipedia.org/wiki/Binding_site" title="Binding site">binding site</a> and is often a depression or &#8220;pocket&#8221; on the molecular surface. This binding ability is mediated by the tertiary structure of the protein, which defines the binding site pocket, and by the chemical properties of the surrounding amino acids&#8217; side chains. Protein binding can be extraordinarily tight and specific; for example, the <a href="http://en.wikipedia.org/wiki/Ribonuclease_inhibitor" title="Ribonuclease inhibitor">ribonuclease inhibitor</a> protein binds to human <a href="http://en.wikipedia.org/wiki/Angiogenin" title="Angiogenin">angiogenin</a> with a sub-femtomolar <a href="http://en.wikipedia.org/wiki/Dissociation_constant" title="Dissociation constant">dissociation constant</a> (&lt;10<sup>-15</sup> M) but does not bind at all to its amphibian homolog <a href="http://en.wikipedia.org/wiki/Onconase" class="mw-redirect" title="Onconase">onconase</a> (&gt;1 M). Extremely minor chemical changes such as the addition of a single methyl group to a binding partner can sometimes suffice to nearly eliminate binding; for example, the <a href="http://en.wikipedia.org/wiki/Aminoacyl_tRNA_synthetase" title="Aminoacyl tRNA synthetase">aminoacyl tRNA synthetase</a> specific to the amino acid <a href="http://en.wikipedia.org/wiki/Valine" title="Valine">valine</a> discriminates against the very similar side chain of the amino acid <a href="http://en.wikipedia.org/wiki/Isoleucine" title="Isoleucine">isoleucine</a>.</p>
<p>Proteins can bind to other proteins as well as to small-molecule substrates. When proteins bind specifically to other copies of the same molecule, they can <a href="http://en.wikipedia.org/wiki/Oligomer" title="Oligomer">oligomerize</a> to form fibrils; this process occurs often in structural proteins that consist of globular monomers that self-associate to form rigid fibers. <a href="http://en.wikipedia.org/wiki/Protein-protein_interaction" title="Protein-protein interaction">Protein-protein interactions</a> also regulate enzymatic activity, control progression through the <a href="http://en.wikipedia.org/wiki/Cell_cycle" title="Cell cycle">cell cycle</a>, and allow the assembly of large <a href="http://en.wikipedia.org/wiki/Protein_complex" title="Protein complex">protein complexes</a> that carry out many closely related reactions with a common biological function. Proteins can also bind to, or even be integrated into, cell membranes. The ability of binding partners to induce conformational changes in proteins allows the construction of enormously complex <a href="http://en.wikipedia.org/wiki/Cell_signaling" title="Cell signaling">signaling</a> networks.</p>
<p><a name="Enzymes" id="Enzymes"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=7" title="Edit section: Enzymes">edit</a>]</span> <span class="mw-headline">Enzymes</span></h3>
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<div class="noprint relarticle mainarticle"><i>Main article: <a href="http://en.wikipedia.org/wiki/Enzyme" title="Enzyme">Enzyme</a></i></div>
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<p>The best-known role of proteins in the cell is their duty as <a href="http://en.wikipedia.org/wiki/Enzyme" title="Enzyme">enzymes</a>, which <a href="http://en.wikipedia.org/wiki/Catalysis" title="Catalysis">catalyze</a> chemical reactions. Enzymes are usually highly specific catalysts that accelerate only one or a few chemical reactions. Enzymes carry out most of the reactions involved in <a href="http://en.wikipedia.org/wiki/Metabolism" title="Metabolism">metabolism</a> and <a href="http://en.wikipedia.org/wiki/Catabolism" title="Catabolism">catabolism</a>, as well as <a href="http://en.wikipedia.org/wiki/DNA_replication" title="DNA replication">DNA replication</a>, <a href="http://en.wikipedia.org/wiki/DNA_repair" title="DNA repair">DNA repair</a>, and <a href="http://en.wikipedia.org/wiki/RNA_synthesis" class="mw-redirect" title="RNA synthesis">RNA synthesis</a>. Some enzymes act on other proteins to add or remove chemical groups in a process known as <a href="http://en.wikipedia.org/wiki/Post-translational_modification" class="mw-redirect" title="Post-translational modification">post-translational modification</a>. About 4,000 reactions are known to be catalyzed by enzymes.<sup id="_ref-9" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-9">[14]</a></sup> The rate acceleration conferred by enzymatic catalysis is often enormous &#8211; as much as 10<sup>17</sup>-fold increase in rate over the uncatalyzed reaction in the case of <a href="http://en.wikipedia.org/wiki/Orotate_decarboxylase" class="mw-redirect" title="Orotate decarboxylase">orotate decarboxylase</a> (78 million years without the enzyme, 18 milliseconds with the enzyme).<sup id="_ref-10" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-10">[15]</a></sup></p>
<p>The molecules bound and acted upon by enzymes are known as <a href="http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29" title="Substrate (biochemistry)">substrates</a>. Although enzymes can consist of hundreds of amino acids, it is usually only a small fraction of the residues that come in contact with the substrate, and an even smaller fraction &#8211; 3-4 residues on average &#8211; that are directly involved in catalysis.<sup id="_ref-11" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-11">[16]</a></sup> The region of the enzyme that binds the substrate and contains the catalytic residues is known as the <a href="http://en.wikipedia.org/wiki/Active_site" title="Active site">active site</a>.</p>
<p><a name="Cell_signaling_and_ligand_transport" id="Cell_signaling_and_ligand_transport"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=8" title="Edit section: Cell signaling and ligand transport">edit</a>]</span> <span class="mw-headline">Cell signaling and ligand transport</span></h3>
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<div class="thumbinner" style="width: 152px"><a href="http://en.wikipedia.org/wiki/Image:Mouse-cholera-antibody-1f4x.png" class="image" title="A mouse antibody against cholera that binds a carbohydrate antigen."><img src="http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Mouse-cholera-antibody-1f4x.png/150px-Mouse-cholera-antibody-1f4x.png" alt="A mouse antibody against cholera that binds a carbohydrate antigen." class="thumbimage" border="0" height="224" width="150" /></a></p>
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<div class="magnify"><a href="http://en.wikipedia.org/wiki/Image:Mouse-cholera-antibody-1f4x.png" class="internal" title="Enlarge"><img src="http://en.wikipedia.org/skins-1.5/common/images/magnify-clip.png" height="11" width="15" /></a></div>
<p>A mouse antibody against <a href="http://en.wikipedia.org/wiki/Cholera" title="Cholera">cholera</a> that binds a <a href="http://en.wikipedia.org/wiki/Carbohydrate" title="Carbohydrate">carbohydrate</a> antigen.</div>
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<p>Many proteins are involved in the process of <a href="http://en.wikipedia.org/wiki/Cell_signaling" title="Cell signaling">cell signaling</a> and <a href="http://en.wikipedia.org/wiki/Signal_transduction" title="Signal transduction">signal transduction</a>. Some proteins, such as <a href="http://en.wikipedia.org/wiki/Insulin" title="Insulin">insulin</a>, are extracellular proteins that transmit a signal from the cell in which they were synthesized to other cells in distant <a href="http://en.wikipedia.org/wiki/Biological_tissue" class="mw-redirect" title="Biological tissue">tissues</a>. Others are <a href="http://en.wikipedia.org/wiki/Membrane_protein" title="Membrane protein">membrane proteins</a> that act as <a href="http://en.wikipedia.org/wiki/Receptor_%28biochemistry%29" title="Receptor (biochemistry)">receptors</a> whose main function is to bind a signaling molecule and induce a biochemical response in the cell. Many receptors have a binding site exposed on the cell surface and an effector domain within the cell, which may have enzymatic activity or may undergo a <a href="http://en.wikipedia.org/wiki/Conformational_change" title="Conformational change">conformational change</a> detected by other proteins within the cell.</p>
<p><a href="http://en.wikipedia.org/wiki/Antibodies" class="mw-redirect" title="Antibodies">Antibodies</a> are protein components of <a href="http://en.wikipedia.org/wiki/Adaptive_immune_system" title="Adaptive immune system">adaptive immune system</a> whose main function is to bind <a href="http://en.wikipedia.org/wiki/Antigen" title="Antigen">antigens</a>, or foreign substances in the body, and target them for destruction. Antibodies can be <a href="http://en.wikipedia.org/wiki/Secrete" class="mw-redirect" title="Secrete">secreted</a> into the extracellular environment or anchored in the membranes of specialized <a href="http://en.wikipedia.org/wiki/B_cell" title="B cell">B cells</a> known as <a href="http://en.wikipedia.org/wiki/Plasma_cell" title="Plasma cell">plasma cells</a>. Whereas enzymes are limited in their binding affinity for their substrates by the necessity of conducting their reaction, antibodies have no such constraints. An antibody&#8217;s binding affinity to its target is extraordinarily high.</p>
<p>Many ligand transport proteins bind particular small biomolecules and transport them to other locations in the body of a multicellular organism. These proteins must have a high binding affinity when their <a href="http://en.wikipedia.org/wiki/Ligand" title="Ligand">ligand</a> is present in high concentrations, but must also release the ligand when it is present at low concentrations in the target tissues. The canonical example of a ligand-binding protein is <a href="http://en.wikipedia.org/wiki/Hemoglobin" title="Hemoglobin">hemoglobin</a>, which transports <a href="http://en.wikipedia.org/wiki/Oxygen" title="Oxygen">oxygen</a> from the <a href="http://en.wikipedia.org/wiki/Lung" title="Lung">lungs</a> to other organs and tissues in all <a href="http://en.wikipedia.org/wiki/Vertebrate" title="Vertebrate">vertebrates</a> and has close <a href="http://en.wikipedia.org/wiki/Homology_%28biology%29" title="Homology (biology)">homologs</a> in every biological <a href="http://en.wikipedia.org/wiki/Kingdom_%28biology%29" title="Kingdom (biology)">kingdom</a>.</p>
<p><a href="http://en.wikipedia.org/wiki/Transmembrane_protein" title="Transmembrane protein">Transmembrane proteins</a> can also serve as ligand transport proteins that alter the <a href="http://en.wikipedia.org/wiki/Semipermeable_membrane" title="Semipermeable membrane">permeability</a> of the cell membrane to small molecules and ions. The membrane alone has a <a href="http://en.wikipedia.org/wiki/Hydrophobic" class="mw-redirect" title="Hydrophobic">hydrophobic</a> core through which <a href="http://en.wikipedia.org/wiki/Chemical_polarity" title="Chemical polarity">polar</a> or charged molecules cannot <a href="http://en.wikipedia.org/wiki/Diffusion" title="Diffusion">diffuse</a>. Membrane proteins contain internal channels that allow such molecules to enter and exit the cell. Many <a href="http://en.wikipedia.org/wiki/Ion_channel" title="Ion channel">ion channel</a> proteins are specialized to select for only a particular ion; for example, <a href="http://en.wikipedia.org/wiki/Potassium" title="Potassium">potassium</a> and <a href="http://en.wikipedia.org/wiki/Sodium" title="Sodium">sodium</a> channels often discriminate for only one of the two ions.</p>
<p><a name="Structural_proteins" id="Structural_proteins"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=9" title="Edit section: Structural proteins">edit</a>]</span> <span class="mw-headline">Structural proteins</span></h3>
<p>Structural proteins confer stiffness and rigidity to otherwise-fluid biological components. Most structural proteins are <a href="http://en.wikipedia.org/wiki/Fibrous_protein" title="Fibrous protein">fibrous proteins</a>; for example, <a href="http://en.wikipedia.org/wiki/Actin" title="Actin">actin</a> and <a href="http://en.wikipedia.org/wiki/Tubulin" title="Tubulin">tubulin</a> are globular and soluble as monomers, but <a href="http://en.wikipedia.org/wiki/Polymer" title="Polymer">polymerize</a> to form long, stiff fibers that comprise the <a href="http://en.wikipedia.org/wiki/Cytoskeleton" title="Cytoskeleton">cytoskeleton</a>, which allows the cell to maintain its shape and size. <a href="http://en.wikipedia.org/wiki/Collagen" title="Collagen">Collagen</a> and <a href="http://en.wikipedia.org/wiki/Elastin" title="Elastin">elastin</a> are critical components of <a href="http://en.wikipedia.org/wiki/Connective_tissue" title="Connective tissue">connective tissue</a> such as <a href="http://en.wikipedia.org/wiki/Cartilage" title="Cartilage">cartilage</a>, and <a href="http://en.wikipedia.org/wiki/Keratin" title="Keratin">keratin</a> is found in hard or filamentous structures such as <a href="http://en.wikipedia.org/wiki/Hair" title="Hair">hair</a>, <a href="http://en.wikipedia.org/wiki/Nail_%28anatomy%29" title="Nail (anatomy)">nails</a>, <a href="http://en.wikipedia.org/wiki/Feather" title="Feather">feathers</a>, <a href="http://en.wikipedia.org/wiki/Hoof" title="Hoof">hooves</a>, and some <a href="http://en.wikipedia.org/wiki/Animal_shell" title="Animal shell">animal shells</a>.</p>
<p>Other proteins that serve structural functions are <a href="http://en.wikipedia.org/wiki/Motor_protein" title="Motor protein">motor proteins</a> such as <a href="http://en.wikipedia.org/wiki/Myosin" title="Myosin">myosin</a>, <a href="http://en.wikipedia.org/wiki/Kinesin" title="Kinesin">kinesin</a>, and <a href="http://en.wikipedia.org/wiki/Dynein" title="Dynein">dynein</a>, which are capable of generating mechanical forces. These proteins are crucial for cellular <a href="http://en.wikipedia.org/wiki/Motility" title="Motility">motility</a> of single celled organisms and the <a href="http://en.wikipedia.org/wiki/Spermatozoon" title="Spermatozoon">sperm</a> of many sexually reproducing multicellular organisms. They also generate the forces exerted by contracting <a href="http://en.wikipedia.org/wiki/Muscle" title="Muscle">muscles</a>.</p>
<p><a name="Methods_of_study" id="Methods_of_study"></a></p>
<h2><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=10" title="Edit section: Methods of study">edit</a>]</span> <span class="mw-headline">Methods of study</span></h2>
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<dd>
<div class="noprint relarticle mainarticle"><i>Main article: <a href="http://en.wikipedia.org/wiki/Protein_methods" title="Protein methods">Protein methods</a></i></div>
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<p>As some of the most commonly studied biological molecules, the activities and structures of proteins are examined both <i><a href="http://en.wikipedia.org/wiki/In_vitro" title="In vitro">in vitro</a></i> and <i><a href="http://en.wikipedia.org/wiki/In_vivo" title="In vivo">in vivo</a></i>. <i>In vitro</i> studies of purified proteins in controlled environments are useful for learning how a protein carries out its function: for example, <a href="http://en.wikipedia.org/wiki/Enzyme_kinetics" title="Enzyme kinetics">enzyme kinetics</a> studies explore the <a href="http://en.wikipedia.org/wiki/Reaction_mechanism" title="Reaction mechanism">chemical mechanism</a> of an enzyme&#8217;s catalytic activity and its relative affinity for various possible substrate molecules. By contrast, <i>in vivo</i> experiments on proteins&#8217; activities within cells or even within whole organisms can provide complementary information about where a protein functions and how it is regulated.</p>
<p><a name="Protein_purification" id="Protein_purification"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=11" title="Edit section: Protein purification">edit</a>]</span> <span class="mw-headline">Protein purification</span></h3>
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<dd>
<div class="noprint relarticle mainarticle"><i>Main article: <a href="http://en.wikipedia.org/wiki/Protein_purification" title="Protein purification">Protein purification</a></i></div>
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<p>In order to perform <i><a href="http://en.wikipedia.org/wiki/In_vitro" title="In vitro">in vitro</a></i> analysis, a protein must be purified away from other cellular components. This process usually begins with <a href="http://en.wikipedia.org/wiki/Cytolysis" title="Cytolysis">cell lysis</a>, in which a cell&#8217;s membrane is disrupted and its internal contents released into a solution known as a <a href="http://en.wikipedia.org/wiki/Crude_lysate" title="Crude lysate">crude lysate</a>. The resulting mixture can be purified using <a href="http://en.wikipedia.org/wiki/Ultracentrifugation" class="mw-redirect" title="Ultracentrifugation">ultracentrifugation</a>, which fractionates the various cellular components into fractions containing soluble proteins; membrane <a href="http://en.wikipedia.org/wiki/Lipid" title="Lipid">lipids</a> and proteins; cellular <a href="http://en.wikipedia.org/wiki/Organelle" title="Organelle">organelles</a>, and <a href="http://en.wikipedia.org/wiki/Nucleic_acid" title="Nucleic acid">nucleic acids</a>. <a href="http://en.wikipedia.org/wiki/Precipitation_%28chemistry%29" title="Precipitation (chemistry)">Precipitation</a> by a method known as <a href="http://en.wikipedia.org/wiki/Salting_out" title="Salting out">salting out</a> can concentrate the proteins from this lysate. Various types of <a href="http://en.wikipedia.org/wiki/Chromatography" title="Chromatography">chromatography</a> are then used to isolate the protein or proteins of interest based on properties such as molecular weight, net charge and binding affinity. The level of purification can be monitored using various types of <a href="http://en.wikipedia.org/wiki/Gel_electrophoresis" title="Gel electrophoresis">gel electrophoresis</a> if the desired protein&#8217;s molecular weight and <a href="http://en.wikipedia.org/wiki/Isoelectric_point" title="Isoelectric point">isoelectric point</a> are known, by <a href="http://en.wikipedia.org/wiki/Spectroscopy" title="Spectroscopy">spectroscopy</a> if the protein has distinguishable spectroscopic features, or by <a href="http://en.wikipedia.org/wiki/Enzyme_assay" title="Enzyme assay">enzyme assays</a> if the protein has enzymatic activity. Additionally, proteins can be isolated according their charge<sup id="_ref-12" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-12">[17]</a></sup> using <a href="http://en.wikipedia.org/wiki/Electrofocusing" class="mw-redirect" title="Electrofocusing">electrofocusing</a>.</p>
<p>For natural proteins, a series of purification steps may be necessary to obtain protein sufficiently pure for laboratory applications. To simplify this process, <a href="http://en.wikipedia.org/wiki/Genetic_engineering" title="Genetic engineering">genetic engineering</a> is often used to add chemical features to proteins that make them easier to purify without affecting their structure or activity. Here, a &#8220;tag&#8221; consisting of a specific amino acid sequence, often a series of <a href="http://en.wikipedia.org/wiki/Histidine" title="Histidine">histidine</a> residues (a &#8220;<a href="http://en.wikipedia.org/wiki/His-tag" class="mw-redirect" title="His-tag">His-tag</a>&#8220;), is attached to one terminus of the protein. As a result, when the lysate is passed over a chromatography column containing <a href="http://en.wikipedia.org/wiki/Nickel" title="Nickel">nickel</a>, the histidine residues ligate the nickel and attach to the column while the untagged components of the lysate pass unimpeded.</p>
<p><a name="Cellular_localization" id="Cellular_localization"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=12" title="Edit section: Cellular localization">edit</a>]</span> <span class="mw-headline">Cellular localization</span></h3>
<div class="thumb tright">
<div class="thumbinner" style="width: 302px"><a href="http://en.wikipedia.org/wiki/Image:Localisations02eng.jpg" class="image" title="Proteins in different cellular compartments and structures tagged with green fluorescent protein (here, white)."><img src="http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Localisations02eng.jpg/300px-Localisations02eng.jpg" alt="Proteins in different cellular compartments and structures tagged with green fluorescent protein (here, white)." class="thumbimage" border="0" height="395" width="300" /></a></p>
<div class="thumbcaption">
<div class="magnify"><a href="http://en.wikipedia.org/wiki/Image:Localisations02eng.jpg" class="internal" title="Enlarge"><img src="http://en.wikipedia.org/skins-1.5/common/images/magnify-clip.png" height="11" width="15" /></a></div>
<p>Proteins in different <a href="http://en.wikipedia.org/wiki/Cellular_compartment" title="Cellular compartment">cellular compartments</a> and structures tagged with <a href="http://en.wikipedia.org/wiki/Green_fluorescent_protein" title="Green fluorescent protein">green fluorescent protein</a> (here, white).</div>
</div>
</div>
<p>The study of proteins <i>in vivo</i> is often concerned with the synthesis and localization of the protein within the cell. Although many intracellular proteins are synthesized in the <a href="http://en.wikipedia.org/wiki/Cytoplasm" title="Cytoplasm">cytoplasm</a> and membrane-bound or secreted proteins in the <a href="http://en.wikipedia.org/wiki/Endoplasmic_reticulum" title="Endoplasmic reticulum">endoplasmic reticulum</a>, the specifics of how proteins are <a href="http://en.wikipedia.org/wiki/Protein_targeting" title="Protein targeting">targeted</a> to specific organelles or cellular structures is often unclear. A useful technique for assessing cellular localization uses genetic engineering to express in a cell a <a href="http://en.wikipedia.org/wiki/Fusion_protein" title="Fusion protein">fusion protein</a> or <a href="http://en.wikipedia.org/wiki/Chimera_%28protein%29" title="Chimera (protein)">chimera</a> consisting of the natural protein of interest linked to a &#8220;<a href="http://en.wikipedia.org/wiki/Reporter_gene" title="Reporter gene">reporter</a>&#8221; such as <a href="http://en.wikipedia.org/wiki/Green_fluorescent_protein" title="Green fluorescent protein">green fluorescent protein</a> (GFP). The fused protein&#8217;s position within the cell can be cleanly and efficiently visualized using <a href="http://en.wikipedia.org/wiki/Microscopy" title="Microscopy">microscopy</a>, as shown in the figure opposite.</p>
<p>Through another genetic engineering application known as <a href="http://en.wikipedia.org/wiki/Site-directed_mutagenesis" title="Site-directed mutagenesis">site-directed mutagenesis</a>, researchers can alter the protein sequence and hence its structure, cellular localization, and susceptibility to regulation, which can be followed <i>in vivo</i> by GFP tagging or <i>in vitro</i> by <a href="http://en.wikipedia.org/wiki/Enzyme_kinetics" title="Enzyme kinetics">enzyme kinetics</a> and binding studies.</p>
<p><a name="Proteomics_and_bioinformatics" id="Proteomics_and_bioinformatics"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=13" title="Edit section: Proteomics and bioinformatics">edit</a>]</span> <span class="mw-headline">Proteomics and bioinformatics</span></h3>
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<dd>
<div class="noprint relarticle mainarticle"><i>Main articles: <a href="http://en.wikipedia.org/wiki/Proteomics" title="Proteomics">Proteomics</a> and <a href="http://en.wikipedia.org/wiki/Bioinformatics" title="Bioinformatics">Bioinformatics</a></i></div>
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<p>The total complement of proteins present at a time in a cell or cell type is known as its <a href="http://en.wikipedia.org/wiki/Proteome" title="Proteome">proteome</a>, and the study of such large-scale data sets defines the field of <a href="http://en.wikipedia.org/wiki/Proteomics" title="Proteomics">proteomics</a>, named by analogy to the related field of <a href="http://en.wikipedia.org/wiki/Genomics" title="Genomics">genomics</a>. Key experimental techniques in proteomics include <a href="http://en.wikipedia.org/wiki/Mass_Spectrometry" class="mw-redirect" title="Mass Spectrometry">Mass Spectrometry</a>, which allows rapid highthroughput identification of proteins and sequencing of peptides. <a href="http://en.wikipedia.org/wiki/Protein_microarray" title="Protein microarray">protein microarrays</a>, which allow the detection of the relative levels of a large number of proteins present in a cell, and <a href="http://en.wikipedia.org/wiki/Two-hybrid_screening" title="Two-hybrid screening">two-hybrid screening</a>, which allows the systematic exploration of <a href="http://en.wikipedia.org/wiki/Protein-protein_interaction" title="Protein-protein interaction">protein-protein interactions</a>. The total complement of biologically possible such interactions is known as the <a href="http://en.wikipedia.org/wiki/Interactome" title="Interactome">interactome</a>. A systematic attempt to determine the structures of proteins representing every possible fold is known as <a href="http://en.wikipedia.org/wiki/Structural_genomics" title="Structural genomics">structural genomics</a>.</p>
<p>The large amount of genomic and proteomic data available for a variety of organisms, including the <a href="http://en.wikipedia.org/wiki/Human_genome" title="Human genome">human genome</a>, allows researchers to efficiently identify <a href="http://en.wikipedia.org/wiki/Homology_%28biology%29" title="Homology (biology)">homologous</a> proteins in distantly related organisms by <a href="http://en.wikipedia.org/wiki/Sequence_alignment" title="Sequence alignment">sequence alignment</a>. <a href="http://en.wikipedia.org/wiki/Sequence_profiling_tool" title="Sequence profiling tool">Sequence profiling tools</a> can perform more specific sequence manipulations such as <a href="http://en.wikipedia.org/wiki/Restriction_enzyme" title="Restriction enzyme">restriction enzyme</a> maps, <a href="http://en.wikipedia.org/wiki/Open_reading_frame" title="Open reading frame">open reading frame</a> analyses for <a href="http://en.wikipedia.org/wiki/Nucleotide" title="Nucleotide">nucleotide</a> sequences, and <a href="http://en.wikipedia.org/wiki/Secondary_structure" title="Secondary structure">secondary structure</a> prediction. From this data <a href="http://en.wikipedia.org/wiki/Phylogenetic_tree" title="Phylogenetic tree">phylogenetic trees</a> can be constructed and <a href="http://en.wikipedia.org/wiki/Evolution" title="Evolution">evolutionary</a> hypotheses developed using special software like <a href="http://en.wikipedia.org/wiki/ClustalW" class="mw-redirect" title="ClustalW">ClustalW</a> regarding the ancestry of modern organisms and the genes they express. The field of <a href="http://en.wikipedia.org/wiki/Bioinformatics" title="Bioinformatics">bioinformatics</a> seeks to assemble, annotate, and analyze genomic and proteomic data, applying <a href="http://en.wikipedia.org/wiki/Computer_science" title="Computer science">computational</a> techniques to biological problems such as <a href="http://en.wikipedia.org/wiki/Gene_finding" class="mw-redirect" title="Gene finding">gene finding</a> and <a href="http://en.wikipedia.org/wiki/Cladistics" title="Cladistics">cladistics</a>.</p>
<p><a name="Structure_prediction_and_simulation" id="Structure_prediction_and_simulation"></a></p>
<h3><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=14" title="Edit section: Structure prediction and simulation">edit</a>]</span> <span class="mw-headline">Structure prediction and simulation</span></h3>
<p>Complementary to the field of structural genomics, <a href="http://en.wikipedia.org/wiki/Protein_structure_prediction" title="Protein structure prediction">protein structure prediction</a> seeks to develop efficient ways to provide plausible models for proteins whose structures have not yet been determined experimentally. The most successful type of structure prediction, known as <a href="http://en.wikipedia.org/wiki/Homology_modeling" title="Homology modeling">homology modeling</a>, relies on the existence of a &#8220;template&#8221; structure with sequence similarity to the protein being modeled; structural genomics&#8217; goal is to provide sufficient representation in solved structures to model most of those that remain. Although producing accurate models remains a challenge when only distantly related template structures are available, it has been suggested that sequence alignment is the bottleneck in this process, as quite accurate models can be produced if a &#8220;perfect&#8221; sequence alignment is known.<sup id="_ref-Zhang_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Zhang">[18]</a></sup> Many structure prediction methods have served to inform the emerging field of <a href="http://en.wikipedia.org/wiki/Protein_engineering" title="Protein engineering">protein engineering</a>, in which novel protein folds have already been designed.<sup id="_ref-Kuhlman_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Kuhlman">[19]</a></sup> A more complex computational problem is the prediction of intermolecular interactions, such as in <a href="http://en.wikipedia.org/wiki/Docking_%28molecular%29" title="Docking (molecular)">molecular docking</a> and <a href="http://en.wikipedia.org/wiki/Protein-protein_interaction_prediction" title="Protein-protein interaction prediction">protein-protein interaction prediction</a>.</p>
<p>The processes of protein folding and binding can be simulated using techniques derived from <a href="http://en.wikipedia.org/wiki/Molecular_dynamics" title="Molecular dynamics">molecular dynamics</a>, which increasingly take advantage of <a href="http://en.wikipedia.org/wiki/Distributed_computing" title="Distributed computing">distributed computing</a> as in the <a href="http://en.wikipedia.org/wiki/Folding%40Home" title="Folding@Home">Folding@Home</a> project. The folding of small alpha-helical protein domains such as the <a href="http://en.wikipedia.org/wiki/Villin" title="Villin">villin</a> headpiece<sup id="_ref-Zagrovic_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Zagrovic">[20]</a></sup> and the <a href="http://en.wikipedia.org/wiki/HIV" title="HIV">HIV</a> accessory protein<sup id="_ref-Herges_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Herges">[21]</a></sup> have been successfully simulated <i>in silico</i>, and hybrid methods that combine standard molecular dynamics with <a href="http://en.wikipedia.org/wiki/Quantum_mechanics" title="Quantum mechanics">quantum mechanics</a> calculations have allowed exploration of the electronic states of <a href="http://en.wikipedia.org/wiki/Rhodopsin" title="Rhodopsin">rhodopsins</a>.<sup id="_ref-Hoffmann_0" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Hoffmann">[22]</a></sup></p>
<p><a name="Nutrition" id="Nutrition"></a></p>
<h2><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=15" title="Edit section: Nutrition">edit</a>]</span> <span class="mw-headline">Nutrition</span></h2>
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<dd><i>Further information: <a href="http://en.wikipedia.org/wiki/Protein_in_nutrition" title="Protein in nutrition">Protein in nutrition</a></i></dd>
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<p>Most <a href="http://en.wikipedia.org/wiki/Microorganism" title="Microorganism">microorganisms</a> and plants can biosynthesize all 20 standard <a href="http://en.wikipedia.org/wiki/Amino_acids" class="mw-redirect" title="Amino acids">amino acids</a>, while animals, (including humans) must obtain some of the amino acids from the <a href="http://en.wikipedia.org/wiki/Diet_%28nutrition%29" title="Diet (nutrition)">diet</a>.<sup id="_ref-Voet_1" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-Voet">[13]</a></sup> Key enzymes in the biosynthetic pathways that synthesize certain amino acids &#8211; such as <a href="http://en.wikipedia.org/wiki/Aspartokinase" title="Aspartokinase">aspartokinase</a>, which catalyzes the first step in the synthesis of <a href="http://en.wikipedia.org/wiki/Lysine" title="Lysine">lysine</a>, <a href="http://en.wikipedia.org/wiki/Methionine" title="Methionine">methionine</a>, and <a href="http://en.wikipedia.org/wiki/Threonine" title="Threonine">threonine</a> from <a href="http://en.wikipedia.org/wiki/Aspartate" class="mw-redirect" title="Aspartate">aspartate</a> &#8211; are not present in animals. The amino acids that an organism cannot synthesize on its own are referred to as <a href="http://en.wikipedia.org/wiki/Essential_amino_acids" class="mw-redirect" title="Essential amino acids">essential amino acids</a>. If amino acids are present in the environment, microorganisms can conserve energy by taking up the amino acids from their surroundings and downregulating their biosynthetic pathways.</p>
<p>In animals, amino acids are obtained through the consumption of foods containing protein. Ingested proteins are broken down through <a href="http://en.wikipedia.org/wiki/Digestion" title="Digestion">digestion</a>, which typically involves <a href="http://en.wikipedia.org/wiki/Denaturation_%28biochemistry%29" title="Denaturation (biochemistry)">denaturation</a> of the protein through exposure to <a href="http://en.wikipedia.org/wiki/Acid" title="Acid">acid</a> and <a href="http://en.wikipedia.org/wiki/Hydrolysis" title="Hydrolysis">hydrolysis</a> by enzymes called <a href="http://en.wikipedia.org/wiki/Protease" title="Protease">proteases</a>. Some ingested amino acids are used for protein biosynthesis, while others are converted to <a href="http://en.wikipedia.org/wiki/Glucose" title="Glucose">glucose</a> through <a href="http://en.wikipedia.org/wiki/Gluconeogenesis" title="Gluconeogenesis">gluconeogenesis</a>, or fed into the <a href="http://en.wikipedia.org/wiki/Citric_acid_cycle" title="Citric acid cycle">citric acid cycle</a>. This use of protein as a fuel is particularly important under <a href="http://en.wikipedia.org/wiki/Starvation" title="Starvation">starvation</a> conditions as it allows the body&#8217;s own proteins to be used to support life, particularly those found in <a href="http://en.wikipedia.org/wiki/Muscle" title="Muscle">muscle</a>.<sup id="_ref-13" class="reference"><a href="http://en.wikipedia.org/wiki/Protein#_note-13">[23]</a></sup> Amino acids are also an important dietary source of <a href="http://en.wikipedia.org/wiki/Nitrogen" title="Nitrogen">nitrogen</a>.</p>
<p><a name="History" id="History"></a></p>
<h2><span class="editsection">[<a href="http://en.wikipedia.org/w/index.php?title=Protein&amp;action=edit&amp;section=16" title="Edit section: History">edit</a>]</span> <span class="mw-headline">History</span></h2>
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<dd><i>Further information: <a href="http://en.wikipedia.org/wiki/History_of_molecular_biology" title="History of molecular biology">History of molecular biology</a></i></dd>
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<p>Proteins were recognized as a distinct class of biological molecules in the eighteenth century by <a href="http://en.wikipedia.org/wiki/Antoine_Fran%C3%A7ois%2C_comte_de_Fourcroy" title="Antoine François, comte de Fourcroy">Antoine Fourcroy</a> and others, distinguished by the molecules&#8217; ability to <a href="http://en.wikipedia.org/wiki/Coagulate" class="mw-redirect" title="Coagulate">coagulate</a> or <a href="http://en.wikipedia.org/wiki/Flocculation" title="Flocculation">flocculate</a> under treatments with heat or acid. Noted examples at the time included albumen from <a href="http://en.wikipedia.org/wiki/Egg_white" title="Egg white">egg whites</a>, <a href="http://en.wikipedia.org/wiki/Blood" title="Blood">blood</a>, <a href="http://en.wikipedia.org/wiki/Serum_albumin" title="Serum albumin">serum albumin</a>, <a href="http://en.wikipedia.org/wiki/Fibrin" title="Fibrin">fibrin</a>, and wheat <a href="http://en.wikipedia.org/wiki/Gluten" title="Gluten">gluten</a>. Dutch chemist <a href="http://en.wikipedia.org/wiki/Gerhardus_Johannes_Mulder" class="mw-redirect" title="Gerhardus Johannes Mulder">Gerhardus Johannes Mulder</a> carried out <a href="http://en.wikipedia.org/wiki/Elemental_analysis" title="Elemental analysis">elemental analysis</a> of common proteins and found that nearly all proteins had the same <a href="http://en.wikipedia.org/wiki/Empirical_formula" title="Empirical formula">empirical formula</a>. The term &#8220;protein&#8221; to describe these molecules was proposed in 1838 by Mulder&#8217;s associate <a href="http://en.wikipedia.org/wiki/J%C3%B6ns_Jakob_Berzelius" title="Jöns Jakob Berzelius">Jöns Jakob Berzelius</a>. Mulder went on to identify the products of protein degradation such as the <a href="http://en.wikipedia.org/wiki/Amino_acid" title="Amino acid">amino acid</a> <a href="http://en.wikipedia.org/wiki/Leucine" title="Leucine">leucine</a> for which he found a (nearly correct) molecular weight of 131 <a href="http://en.wikipedia.org/wiki/Atomic_mass_unit" title="Atomic mass unit">Da</a>.</p>
<p>The difficulty in purifying proteins in large quantities made them very difficult for early protein biochemists to study. Hence, early studies focused on proteins that could be purified in large quantities, e.g., those of <a href="http://en.wikipedia.org/wiki/Blood" title="Blood">blood</a>, <a href="http://en.wikipedia.org/wiki/Egg_white" title="Egg white">egg white</a>, various <a href="http://en.wikipedia.org/wiki/Toxin" title="Toxin">toxins</a>, and digestive/metabolic enzymes obtained from <a href="http://en.wikipedia.org/wiki/Slaughterhouse" title="Slaughterhouse">slaughterhouses</a>. In the late 1950s, the <a href="http://en.wikipedia.org/wiki/Armour_and_Company" title="Armour and Company">Armour Hot Dog Co.</a> purified 1 kg (= one million milligrams) of pure bovine pancreatic <a href="http://en.wikipedia.org/wiki/Ribonuclease_A" title="Ribonuclease A">ribonuclease A</a> and made it freely available to scientists around the world.</p>
<p><a href="http://en.wikipedia.org/wiki/Linus_Pauling" title="Linus Pauling">Linus Pauling</a> is credited with the successful prediction of regular protein <a href="http://en.wikipedia.org/wiki/Secondary_structure" title="Secondary structure">secondary structures</a> based on <a href="http://en.wikipedia.org/wiki/Hydrogen_bonding" class="mw-redirect" title="Hydrogen bonding">hydrogen bonding</a>, an idea first put forth by <a href="http://en.wikipedia.org/wiki/William_Astbury" title="William Astbury">William Astbury</a> in 1933. Later work by <a href="http://en.wikipedia.org/wiki/Walter_Kauzmann" title="Walter Kauzmann">Walter Kauzmann</a> on <a href="http://en.wikipedia.org/wiki/Denaturation_%28biochemistry%29" title="Denaturation (biochemistry)">denaturation</a>, based partly on previous studies by <a href="http://en.wikipedia.org/wiki/Kaj_Ulrik_Linderstr%C3%B8m-Lang" title="Kaj Ulrik Linderstrøm-Lang">Kaj Linderstrøm-Lang</a>, contributed an understanding of <a href="http://en.wikipedia.org/wiki/Protein_folding" title="Protein folding">protein folding</a> and structure mediated by <a href="http://en.wikipedia.org/wiki/Hydrophobic_core" class="mw-redirect" title="Hydrophobic core">hydrophobic interactions</a>. In 1949 <a href="http://en.wikipedia.org/wiki/Fred_Sanger" class="mw-redirect" title="Fred Sanger">Fred Sanger</a> correctly determined the amino acid sequence of <a href="http://en.wikipedia.org/wiki/Insulin" title="Insulin">insulin</a>, thus conclusively demonstrating that proteins consisted of linear polymers of amino acids rather than branched chains, <a href="http://en.wikipedia.org/wiki/Colloid" title="Colloid">colloids</a>, or <a href="http://en.wikipedia.org/wiki/Cyclol" title="Cyclol">cyclols</a>. The first atomic-resolution structures of proteins were solved by <a href="http://en.wikipedia.org/wiki/X-ray_crystallography" title="X-ray crystallography">X-ray crystallography</a> in the 1960s and by <a href="http://en.wikipedia.org/wiki/Protein_nuclear_magnetic_resonance_spectroscopy" title="Protein nuclear magnetic resonance spectroscopy">NMR</a> in the 1980s. As of 2006, the <a href="http://en.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank">Protein Data Bank</a> has nearly 40,000 atomic-resolution structures of proteins. In more recent times, <a href="http://en.wikipedia.org/wiki/Cryo-electron_microscopy" title="Cryo-electron microscopy">cryo-electron microscopy</a> of large macromolecular assemblies and computational <a href="http://en.wikipedia.org/wiki/Protein_structure_prediction" title="Protein structure prediction">protein structure prediction</a> of small protein <a href="http://en.wikipedia.org/wiki/Structural_domain" class="mw-redirect" title="Structural domain">domains</a> are two methods approaching atomic resolution.</p>
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		<media:content url="http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Myoglobin.png/200px-Myoglobin.png" medium="image">
			<media:title type="html">A representation of the 3D structure of myoglobin showing coloured alpha helices. This protein was the first to have its structure solved by X-ray crystallography.</media:title>
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		<media:content url="http://upload.wikimedia.org/wikipedia/en/thumb/1/17/Peptide_group_resonance.png/300px-Peptide_group_resonance.png" medium="image">
			<media:title type="html">Resonance structures of the peptide bond that links individual amino acids to form a protein polymer.</media:title>
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		<media:content url="http://upload.wikimedia.org/wikipedia/en/thumb/b/ba/Peptide_bond.jpg/300px-Peptide_bond.jpg" medium="image">
			<media:title type="html">Section of a protein structure showing serine and alanine residues linked together by peptide bonds. Carbons are shown in white and hydrogens are omitted for clarity.</media:title>
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		<media:content url="http://upload.wikimedia.org/wikipedia/commons/thumb/3/37/Genetic_code.svg/300px-Genetic_code.svg.png" medium="image">
			<media:title type="html">The DNA sequence of a gene encodes the amino acid sequence of a protein.</media:title>
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		<media:content url="http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Proteinviews-1tim.png/500px-Proteinviews-1tim.png" medium="image">
			<media:title type="html">Three possible representations of the three-dimensional structure of the protein triose phosphate isomerase. Left: all-atom representation colored by atom type. Middle: simplified representation illustrating the backbone conformation, colored by secondary structure. Right: Solvent-accessible surface representation colored by residue type (acidic residues red, basic residues blue, polar residues green, nonpolar residues white).</media:title>
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		<media:content url="http://upload.wikimedia.org/wikipedia/en/a/ae/Protein_Dynamics_Cytochrome_C_2NEW_smaller.gif" medium="image">
			<media:title type="html">NMR structures of the protein cytochrome c in solution show the constantly shifting dynamic structure of the protein. Larger version.</media:title>
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		<media:content url="http://upload.wikimedia.org/wikipedia/commons/thumb/5/53/Protein_Composite.jpg/500px-Protein_Composite.jpg" medium="image">
			<media:title type="html">Molecular surface of several proteins showing their comparative sizes. From left to right are: Antibody (IgG), Hemoglobin, Insulin (a hormone), Adenylate kinase (an enzyme), and Glutamine synthetase (an enzyme).</media:title>
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		<media:content url="http://upload.wikimedia.org/wikipedia/en/thumb/e/e7/Hexokinase_ball_and_stick_model%2C_with_substrates_to_scale_copy.png/350px-Hexokinase_ball_and_stick_model%2C_with_substrates_to_scale_copy.png" medium="image">
			<media:title type="html">The enzyme hexokinase is shown as a simple ball-and-stick molecular model. To scale in the top right-hand corner are two of its substrates, ATP and glucose.</media:title>
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		<media:content url="http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Mouse-cholera-antibody-1f4x.png/150px-Mouse-cholera-antibody-1f4x.png" medium="image">
			<media:title type="html">A mouse antibody against cholera that binds a carbohydrate antigen.</media:title>
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			<media:title type="html">Proteins in different cellular compartments and structures tagged with green fluorescent protein (here, white).</media:title>
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